Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2886 ATGGCTTCCCCTAAACTCACAGCCTTTGCTGTTGTGGCGGCTCTGATGCTAGCGAGCTCTCACGCTCAGCTTAACCCTTTCTTCTACGCCTACACATGCCCTAAGCTCCCTTTCATTGTTGCAGACGTGATTGCGCGAGCTCTACAAACTGACGAACGAGCAGCTGCCAAACTCATTCGCCTCCATTTCCACGACTGTTTCGTCAATGGGTGCGACGGTTCTGTGTTGCTTGAGGCTGCTACGGGCATCGAAAGTGAATTAGACACACCCCCAAACAATGGGATCCAAGGGCTGGACATCGTGGACAACATCAAAGCAGCACTCGAAACCTCTTGCCCAGGCGTTGTTTCATGCGCTGACATCTTAGCCATTTCCTCTCAAATCTCTGTTTTCTTGTCGGGAGGCCCATTTTGGTTAGCTCCACTGGGAAGAAAAGACAGCAGAATAGCCAACAAAACCGGAACCTCAAATCTTCCCGGTCCGTCAGAACCTCTTACCGGACTTAAAGCCAAGTTTGGAGCTCTTGGGTTCGATTCTACGGATCTGGTGGCTCTATCAGGAGCACACACGTTCGGTAAAGCAAGATGCTTTTTCTTCAACGGCCGCTTCGACAACTTCAACAACACCGGAAAACCCGACCCGACGCTAGACCCGACTTACAGAGAGCAGCTTCGAGGACTATGTACGACCCCACAAACCCGAGTGAATTTCGACCCGACCACGCCAACAAAATTCGACAAAGCGTACTACTCCAATCTGCTGAGCCTAAAGGGGCTTCTCCAAAGTGACCAAGAGCTCTTCTCCACGCCCAGGGCCGATACCATAGCCATCGTGAAAAAATTCGCAGCTAACGAGAAGGCGTTCTTTAAACAATTTGTGAAATCCATGATCAAAATGGGGAATTTGAAGCCTCCATCGGGCATCAAATCAGAAGTGAGATTAAACTGCAGGAGGGTCAACCCGGTGAAGGCCTTTGACATTATGTAA 987 50.05 MASPKLTAFAVVAALMLASSHAQLNPFFYAYTCPKLPFIVADVIARALQTDERAAAKLIRLHFHDCFVNGCDGSVLLEAATGIESELDTPPNNGIQGLDIVDNIKAALETSCPGVVSCADILAISSQISVFLSGGPFWLAPLGRKDSRIANKTGTSNLPGPSEPLTGLKAKFGALGFDSTDLVALSGAHTFGKARCFFFNGRFDNFNNTGKPDPTLDPTYREQLRGLCTTPQTRVNFDPTTPTKFDKAYYSNLLSLKGLLQSDQELFSTPRADTIAIVKKFAANEKAFFKQFVKSMIKMGNLKPPSGIKSEVRLNCRRVNPVKAFDIM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46771327 46772668 + Lag0010373.1 Lac9g2886 621812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2886 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Lac9g2886 328 CDD secretory_peroxidase 23 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac9g2886 328 Gene3D Peroxidase, domain 2 159 299 - -
Lac9g2886 328 PANTHER PEROXIDASE 72-RELATED 13 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 FunFam Peroxidase 159 299 - -
Lac9g2886 328 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 Gene3D - 28 320 - -
Lac9g2886 328 SUPERFAMILY Heme-dependent peroxidases 23 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 ProSiteProfiles Plant heme peroxidase family profile. 23 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2886 328 FunFam Peroxidase 27 171 - -
Lac9g2886 328 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Lac9g2886 328 Pfam Peroxidase 40 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0525 Lac-Chr6:4368056 Lac9g2886 Lac-Chr9:46771327 2.80E-65 dispersed
Lac9g2886 Lac-Chr9:46771327 Lac9g2891 Lac-Chr9:46801022 2.60E-106 dispersed
Lac9g2885 Lac-Chr9:46768780 Lac9g2886 Lac-Chr9:46771327 1.60E-132 tandem
Lac9g2886 Lac-Chr9:46771327 Lac9g2887 Lac-Chr9:46776253 7.40E-162 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2886 K00430 - csv:101211989 518.079