Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2887 ATGGCTTCCTCTAAACTTACAGCCTTTGCCCTGGTGCTGGCTTTGTTGCTGGCGACCTCTCAAGCTCAGCTTAACCCTTTCTTCTACGCCTTATCATGCCCTCTCCTGCCCGGGATTGTTCTCGACGTCGTCTCCCGAGCTCTACAAACTGACGATCGAGCAGCTGCCAAGCTCATTCGCCTCCATTTTCACGACTGCTTCGTTAATGGATGTGACGGTTCTGTGCTGCTCGAGCCCGCACCGGGCATCGACAGTGAATTAAACGGACCTCCAAACAATGGGATTCAAGGGCTAGACATAGTGGACAACATCAAAGCAGAACTTGAAAGATTTTGCCCCGGCGTCGTTTCCTGCGCTGACATCTTAGCCATTTCGTCACAAATTTCTGTTTTCTTGTCGGGAGGGCCAGCTTGGATGGTTCCATTGGGAAGAAAAGACAGCAGAATAGCCAACAGAACCGGAACCTCAAATCTTCCCGGTCCATCAGAACCTCTTACCGGACTTAAAGCCAAGTTTGGAGCTCTTGGGTTCGATTCCACGGATCTCGTGGCTCTATCAGGAGCACACACGTTCGGTAAAGCAAGATGCCTTTTCTTCAATGGCCGCTTCGACAACTTCAACGGCACCGGCCGACCCGACCCGACGCTAGACCCGGCTTACAGGGAGCAGCTGAGGAAACTGTGTGCGTCGAGCCCACAAACACGAGTGAATTTCGACCCGACCACGCCAACAAAATTCGACAAAGCCTACTATTCCAATCTGCTCAGCCTCAAGGGGCTTCTCCAAAGTGACCAAGAGCTCTTCTCCACGCCCAGGGCTGATACCACGGCGATCGTAAAGAATTTCGCCGCTAACGAGATTGCGTTCTTCAACCAATTTGTGAAATCGATGATCAAAATGGGGAATCTCAAAGCTCCGGCCGGCATCAGATCAGAAGTGAGATTAAACTGTAGGAGGGTCAACCCGGTGGCTGCCCATGATGTTATGTAA 990 51.62 MASSKLTAFALVLALLLATSQAQLNPFFYALSCPLLPGIVLDVVSRALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLEPAPGIDSELNGPPNNGIQGLDIVDNIKAELERFCPGVVSCADILAISSQISVFLSGGPAWMVPLGRKDSRIANRTGTSNLPGPSEPLTGLKAKFGALGFDSTDLVALSGAHTFGKARCLFFNGRFDNFNGTGRPDPTLDPAYREQLRKLCASSPQTRVNFDPTTPTKFDKAYYSNLLSLKGLLQSDQELFSTPRADTTAIVKNFAANEIAFFNQFVKSMIKMGNLKAPAGIRSEVRLNCRRVNPVAAHDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46776253 46777518 + Lag0010374.1 Lac9g2887 621813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2887 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Lac9g2887 329 Gene3D Peroxidase, domain 2 159 300 - -
Lac9g2887 329 Gene3D - 28 321 - -
Lac9g2887 329 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 FunFam Peroxidase 159 300 - -
Lac9g2887 329 Pfam Peroxidase 42 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 PANTHER PEROXIDASE 72-RELATED 13 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Lac9g2887 329 ProSiteProfiles Plant heme peroxidase family profile. 23 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2887 329 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2885 Lac-Chr9:46768780 Lac9g2887 Lac-Chr9:46776253 2.50E-133 dispersed
Lac9g2887 Lac-Chr9:46776253 Lac9g2891 Lac-Chr9:46801022 5.90E-111 dispersed
Lac9g2886 Lac-Chr9:46771327 Lac9g2887 Lac-Chr9:46776253 7.40E-162 tandem
Lac9g2887 Lac-Chr9:46776253 Lac9g2888 Lac-Chr9:46780560 2.20E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2887 K00430 - csv:101211989 512.301