Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2888 ATGGCCTCTTTCAATGTAGTAGCAGCCTTCCTTTTGTTTCTGGGTCTTTTGTTTGGAGCCTCTTTTGCCCAACTCACCGAGGACTTCTACGACCAAACTTGCCCTCGTCTCCCCAACATTGTCCGCCGTGAGGTCAAGAGAGCTATCGAATCCGACATCCGTGCCGGGGCCAAACTCATCCGCCTCCATTTTCATGACTGCTTCGTCCAAGGCTGCGATGGCTCTGTTTTGCTACTGGACGCTCCCGGCATAGACAGTGAGCTCAACGGACTTGGAAATTTAGGAATCCAAGGACTCGAAATTGTCGCCGCCATCAAAGCCGCCGTCGAGAGGGAATGTCCCGGCGTCGTCTCCTGCGCCGACATCCTAGCTCAGGCCTCTAAAGACTCTGTCGACGTGCAAGGAGGGCCTAGTTGGAGAGTTCTATACGGAAGAAGAGACAGCAGAACAGCCAATAAAACAGGGGCTGATCAACTCCCAAGTCCCTTCGAAACTCTCGAGCCACTCAAGAAAAAGTTCGAAGCGGTTGGCCTCAATTCCACCGATCTGGTGGCTCTATCTGGGGCACATACGTTCGGTCGGTCGAGATGCAGGTTCTTCAACGGGCGTTTGTCGAACTTCAGCGGAAGTGGGCAGCCAGATCCGACGCTGGACCCAACGTACAGGGAAGAGCTGGAAAGAGCTTGTACAAGTGAAGACACACGAGTGAATTTCGATCCAACAACACCGGACACATTCGACAAGAATTACTACACGAACCTTCAAGCCAATCGAGGGCTTCTAACGAGCGACCAAGTGATGTTCTCCGAGGAAGGAGCCGACACAGCCGACACTGTCGAGCTTCTTGCGTCGCGAGAAGGCACCTTCTTTAGATTCTTTAGGCGCTCCATGATTAAGATGGGGAATATCAGACCTTTAACTGGAAACCAAGGGGAAATCAGAACAAACTGCAGCAGGCTCAATGACTTGGGAGCTCAACCAGGCCACGATGTTATGTAA 999 52.25 MASFNVVAAFLLFLGLLFGASFAQLTEDFYDQTCPRLPNIVRREVKRAIESDIRAGAKLIRLHFHDCFVQGCDGSVLLLDAPGIDSELNGLGNLGIQGLEIVAAIKAAVERECPGVVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRTANKTGADQLPSPFETLEPLKKKFEAVGLNSTDLVALSGAHTFGRSRCRFFNGRLSNFSGSGQPDPTLDPTYREELERACTSEDTRVNFDPTTPDTFDKNYYTNLQANRGLLTSDQVMFSEEGADTADTVELLASREGTFFRFFRRSMIKMGNIRPLTGNQGEIRTNCSRLNDLGAQPGHDVM 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46780560 46781815 + Lag0010375.1 Lac9g2888 621814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2888 332 SUPERFAMILY Heme-dependent peroxidases 24 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Lac9g2888 332 Gene3D - 29 321 - -
Lac9g2888 332 Gene3D Peroxidase, domain 2 160 300 - -
Lac9g2888 332 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 Pfam Peroxidase 41 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PANTHER PEROXIDASE 72-RELATED 15 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 ProSiteProfiles Plant heme peroxidase family profile. 24 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 FunFam Peroxidase 28 171 - -
Lac9g2888 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lac9g2888 332 CDD secretory_peroxidase 24 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac9g2888 332 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2888 332 FunFam Peroxidase 160 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2888 Lac-Chr9:46780560 Lac9g2891 Lac-Chr9:46801022 1.10E-136 dispersed
Lac9g2887 Lac-Chr9:46776253 Lac9g2888 Lac-Chr9:46780560 2.20E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2888 K00430 - csv:101212230 473.396