Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2895 ATGGATACATTGGATTCCTGTGCCCACTACTACCACGTGGACATTCCGACGACTTCTAATCTTACGTGCTCAGATTCACGTGAGCTCGAAATTATTATGAAAGGACGGAAATTCATCCGTCTTTCTCCAGCCAATCTACGGCAGATGTGTTCTATTTGTAGAGTTTCAACTGTCTTTATTAACGTTCTTGGCCTCTGCAAAAGCCAATACTGTGTCACTAATAAAGACGAAGAGCAGCCCCATTTCAAAAAGGTTTCTAAAATATATATTCCCATCCCCACGAACCCTTCGCAAGGGATCGATCACATTCATCAGCCCATCCACCAGCAACCAAATCTTTTGACTCTCGAGAGTTTTGTTGTGCCAATCAAACGGCGACACCAGTTCAACCCTCGCGGGCTTTGCTCCACCTCACAACCCACCCTCTTGTTCTTGTCTTTCGATTTTCTTTTGGGGCCCAAGAATTATGCAATTATTGGATTGTTGAGCGGCGTAAAGTTGAATATTCAACCATTTGGGGGTTCAGAATCTTTTCTGCCTGCTGCGTTTCTCTACCATTTTGCACTTCTCCTGCTGTTTTCTGGTCGATCAGTTTCAGTACCTTCAAGTTTTCCATCTGGATATGGTGGTATGAGTACTGTAGAATTCAGAGAGAACGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGCTGCGCCTTACATCGATAGATTCTGAAGCAGCAACTTCTCGTTCAGAGTCCAAAGGTGTCTCTTTCAGGAAAGCTTCCACTGGTGGTTTTGTCAGGAATCGTAATGATGTACACGAGCTACTGGATTGTAGTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCCAGGGTTCAGAACTGCTGCCCTACCTGCCGCCACGAGCTTGGGAACATAAGGTGCCTGGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTATGTACGAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATTCCGCCCGTACAATTGTCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCACGAAGTTGAAAATGCCACATGGATGCTTACTGTTTTTAACTGCTTTGGACGACAGTTCTGCTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCGGTTTATATGGCGTTTCTCCGGTTCATGGGCGACGACGACGATGCGAAACAATTTTCTTATAGTCTGGAAGTTGGTGGGAATGGCAGAAAACTCATATGGCAAGGTATGCCAAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGTCATGATGGATTAATCATTCAGAGGAACTTGGCACTGTTCTGCTCTGGAAATGAAGGGCAGGAATTGAAGCTAAAGGTTGCAGGGCGAATATGGAGAGTGAGGTGA 1608 45.71 MDTLDSCAHYYHVDIPTTSNLTCSDSRELEIIMKGRKFIRLSPANLRQMCSICRVSTVFINVLGLCKSQYCVTNKDEEQPHFKKVSKIYIPIPTNPSQGIDHIHQPIHQQPNLLTLESFVVPIKRRHQFNPRGLCSTSQPTLLFLSFDFLLGPKNYAIIGLLSGVKLNIQPFGGSESFLPAAFLYHFALLLLFSGRSVSVPSSFPSGYGGMSTVEFRENGMYQQQKSREEHASSAASFCKEVTELRLTSIDSEAATSRSESKGVSFRKASTGGFVRNRNDVHELLDCSVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCMYENLGCIDMFPYYSKLKHEKNCKFRPYNCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGMPRSIRDSHRKVRDSHDGLIIQRNLALFCSGNEGQELKLKVAGRIWRVR 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46835838 46839773 + Lag0010382.1 Lac9g2895 621821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2895 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 395 IPR013083 -
Lac9g2895 535 CDD RING-HC_SIAHs 285 323 - -
Lac9g2895 535 ProSiteProfiles Zinc finger RING-type profile. 287 323 IPR001841 -
Lac9g2895 535 FunFam E3 ubiquitin-protein ligase SINAT5-like 396 528 - -
Lac9g2895 535 FunFam E3 ubiquitin-protein ligase SINAT3 337 395 - -
Lac9g2895 535 SUPERFAMILY TRAF domain-like 340 531 - -
Lac9g2895 535 Pfam Sina, TRAF-like domain 431 527 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lac9g2895 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 339 IPR013083 -
Lac9g2895 535 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 398 528 IPR008974 GO:0005515(InterPro)
Lac9g2895 535 SUPERFAMILY RING/U-box 278 329 - -
Lac9g2895 535 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 241 530 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lac9g2895 535 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 287 322 IPR049548 -
Lac9g2895 535 ProSiteProfiles Zinc finger SIAH-type profile. 340 400 IPR013010 GO:0008270(InterPro)
Lac9g2895 535 Pfam Sina, zinc finger 336 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0992 Lac-Chr1:26037858 Lac9g2895 Lac-Chr9:46835838 3.80E-136 dispersed
Lac8g1940 Lac-Chr8:37753855 Lac9g2895 Lac-Chr9:46835838 2.10E-21 dispersed
Lac8g2069 Lac-Chr8:39178006 Lac9g2895 Lac-Chr9:46835838 2.80E-123 dispersed
Lac9g2895 Lac-Chr9:46835838 Lac12g0956 Lac-Chr12:10487448 7.90E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2895 K04506 - csv:101213438 642.114