Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2895 | ATGGATACATTGGATTCCTGTGCCCACTACTACCACGTGGACATTCCGACGACTTCTAATCTTACGTGCTCAGATTCACGTGAGCTCGAAATTATTATGAAAGGACGGAAATTCATCCGTCTTTCTCCAGCCAATCTACGGCAGATGTGTTCTATTTGTAGAGTTTCAACTGTCTTTATTAACGTTCTTGGCCTCTGCAAAAGCCAATACTGTGTCACTAATAAAGACGAAGAGCAGCCCCATTTCAAAAAGGTTTCTAAAATATATATTCCCATCCCCACGAACCCTTCGCAAGGGATCGATCACATTCATCAGCCCATCCACCAGCAACCAAATCTTTTGACTCTCGAGAGTTTTGTTGTGCCAATCAAACGGCGACACCAGTTCAACCCTCGCGGGCTTTGCTCCACCTCACAACCCACCCTCTTGTTCTTGTCTTTCGATTTTCTTTTGGGGCCCAAGAATTATGCAATTATTGGATTGTTGAGCGGCGTAAAGTTGAATATTCAACCATTTGGGGGTTCAGAATCTTTTCTGCCTGCTGCGTTTCTCTACCATTTTGCACTTCTCCTGCTGTTTTCTGGTCGATCAGTTTCAGTACCTTCAAGTTTTCCATCTGGATATGGTGGTATGAGTACTGTAGAATTCAGAGAGAACGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGCTGCGCCTTACATCGATAGATTCTGAAGCAGCAACTTCTCGTTCAGAGTCCAAAGGTGTCTCTTTCAGGAAAGCTTCCACTGGTGGTTTTGTCAGGAATCGTAATGATGTACACGAGCTACTGGATTGTAGTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCCAGGGTTCAGAACTGCTGCCCTACCTGCCGCCACGAGCTTGGGAACATAAGGTGCCTGGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTATGTACGAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATTCCGCCCGTACAATTGTCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCACGAAGTTGAAAATGCCACATGGATGCTTACTGTTTTTAACTGCTTTGGACGACAGTTCTGCTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCGGTTTATATGGCGTTTCTCCGGTTCATGGGCGACGACGACGATGCGAAACAATTTTCTTATAGTCTGGAAGTTGGTGGGAATGGCAGAAAACTCATATGGCAAGGTATGCCAAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGTCATGATGGATTAATCATTCAGAGGAACTTGGCACTGTTCTGCTCTGGAAATGAAGGGCAGGAATTGAAGCTAAAGGTTGCAGGGCGAATATGGAGAGTGAGGTGA | 1608 | 45.71 | MDTLDSCAHYYHVDIPTTSNLTCSDSRELEIIMKGRKFIRLSPANLRQMCSICRVSTVFINVLGLCKSQYCVTNKDEEQPHFKKVSKIYIPIPTNPSQGIDHIHQPIHQQPNLLTLESFVVPIKRRHQFNPRGLCSTSQPTLLFLSFDFLLGPKNYAIIGLLSGVKLNIQPFGGSESFLPAAFLYHFALLLLFSGRSVSVPSSFPSGYGGMSTVEFRENGMYQQQKSREEHASSAASFCKEVTELRLTSIDSEAATSRSESKGVSFRKASTGGFVRNRNDVHELLDCSVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCMYENLGCIDMFPYYSKLKHEKNCKFRPYNCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGMPRSIRDSHRKVRDSHDGLIIQRNLALFCSGNEGQELKLKVAGRIWRVR | 535 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46835838 | 46839773 | + | Lag0010382.1 | Lac9g2895 | 621821 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2895 | 535 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 340 | 395 | IPR013083 | - | |
Lac9g2895 | 535 | CDD | RING-HC_SIAHs | 285 | 323 | - | - | |
Lac9g2895 | 535 | ProSiteProfiles | Zinc finger RING-type profile. | 287 | 323 | IPR001841 | - | |
Lac9g2895 | 535 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 396 | 528 | - | - | |
Lac9g2895 | 535 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 337 | 395 | - | - | |
Lac9g2895 | 535 | SUPERFAMILY | TRAF domain-like | 340 | 531 | - | - | |
Lac9g2895 | 535 | Pfam | Sina, TRAF-like domain | 431 | 527 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Lac9g2895 | 535 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 339 | IPR013083 | - | |
Lac9g2895 | 535 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 398 | 528 | IPR008974 | GO:0005515(InterPro) | |
Lac9g2895 | 535 | SUPERFAMILY | RING/U-box | 278 | 329 | - | - | |
Lac9g2895 | 535 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 241 | 530 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Lac9g2895 | 535 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 287 | 322 | IPR049548 | - | |
Lac9g2895 | 535 | ProSiteProfiles | Zinc finger SIAH-type profile. | 340 | 400 | IPR013010 | GO:0008270(InterPro) | |
Lac9g2895 | 535 | Pfam | Sina, zinc finger | 336 | 411 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g0992 | Lac-Chr1:26037858 | Lac9g2895 | Lac-Chr9:46835838 | 3.80E-136 | dispersed | |
Lac8g1940 | Lac-Chr8:37753855 | Lac9g2895 | Lac-Chr9:46835838 | 2.10E-21 | dispersed | |
Lac8g2069 | Lac-Chr8:39178006 | Lac9g2895 | Lac-Chr9:46835838 | 2.80E-123 | dispersed | |
Lac9g2895 | Lac-Chr9:46835838 | Lac12g0956 | Lac-Chr12:10487448 | 7.90E-113 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2895 | K04506 | - | csv:101213438 | 642.114 |