Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2932 AGAGCTGTAGAAGATTGTACATCCATGAGAAGATCAGGTGTAAATCAATCAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCAAAAGTGAAAATTGCCAAAAATTCTGAAACTGGGGAACATGTAGCACTAAAGATCCTCGACAAAGAGAAAGTTCTGAGGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGAAGCAAAACAAAGATATTTATTGTTTTGGAGTTCGTTACTGGAGGAGAGCTTTTCGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGAAGATATTTCCAGCAACTTATAAATGCCGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATTCCTACGGGAATCTTAAAGTTTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGCGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTATGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTCGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATCAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCATGGGTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTGTACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCCATTTTCGAGGAGCATAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTTAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACAGCCAGTAGCCATGAATGCCTTCGAGTTAATTTCAATGTCAAAAGGACTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAACAAGATTGAAGAAGCTGCCAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTATAAGATGAGACTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTCTGTTCATGTGGTTGAGATGCGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACCGAGGAAGACATGCAAGAAACAAAGTGA 1359 40.03 RAVEDCTSMRRSGVNQSKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGEHVALKILDKEKVLRHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDSYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWVSLDAMKLIARILDPNPMTRITVPEILEDEWFKKDYKPPIFEEHKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47112424 47118054 + Lag0010419.1 Lac9g2932 621858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2932 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2932 452 CDD CIPK_C 325 439 - -
Lac9g2932 452 Pfam NAF domain 321 380 IPR004041 GO:0007165(InterPro)
Lac9g2932 452 FunFam Non-specific serine/threonine protein kinase 318 443 - -
Lac9g2932 452 Pfam Protein kinase domain 26 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2932 452 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165(InterPro)
Lac9g2932 452 Gene3D Transferase(Phosphotransferase) domain 1 106 288 - -
Lac9g2932 452 Gene3D Kinase associated domain 1, KA1 318 443 - -
Lac9g2932 452 SMART serkin_6 26 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2932 452 SUPERFAMILY Protein kinase-like (PK-like) 22 303 IPR011009 -
Lac9g2932 452 FunFam Non-specific serine/threonine protein kinase 17 105 - -
Lac9g2932 452 Gene3D Phosphorylase Kinase; domain 1 15 105 - -
Lac9g2932 452 CDD STKc_SnRK3 25 280 - -
Lac9g2932 452 FunFam Non-specific serine/threonine protein kinase 19 321 - -
Lac9g2932 452 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Lac9g2932 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 431 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac9g2932 452 ProSiteProfiles Protein kinase domain profile. 26 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1109 Lac-Chr10:9128808 Lac9g2932 Lac-Chr9:47112424 2.20E-178 dispersed
Lac12g1216 Lac-Chr12:17025241 Lac9g2932 Lac-Chr9:47112424 3.50E-44 dispersed
Lac3g0800 Lac-Chr3:6352637 Lac9g2932 Lac-Chr9:47112424 1.10E-145 dispersed
Lac6g1034 Lac-Chr6:9430309 Lac9g2932 Lac-Chr9:47112424 1.30E-145 dispersed
Lac7g0095 Lac-Chr7:797547 Lac9g2932 Lac-Chr9:47112424 1.30E-166 dispersed
Lac7g0580 Lac-Chr7:4601423 Lac9g2932 Lac-Chr9:47112424 6.20E-13 dispersed
Lac7g1016 Lac-Chr7:8837848 Lac9g2932 Lac-Chr9:47112424 2.30E-116 dispersed
Lac9g1603 Lac-Chr9:35237261 Lac9g2932 Lac-Chr9:47112424 9.40E-54 dispersed
Lac9g2336 Lac-Chr9:42677221 Lac9g2932 Lac-Chr9:47112424 1.30E-105 dispersed
Lac9g2337 Lac-Chr9:42681407 Lac9g2932 Lac-Chr9:47112424 6.10E-125 dispersed
Lac9g2932 Lac-Chr9:47112424 Lac4g1857 Lac-Chr4:37880167 4.90E-31 dispersed
Lac12g1907 Lac-Chr12:35629490 Lac9g2932 Lac-Chr9:47112424 3.90E-73 transposed
Lac10g2724 Lac-Chr10:41709331 Lac9g2932 Lac-Chr9:47112424 5.90E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86484 PF00069 Pkinase 3.90E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2932 - - - 0.0