Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2934 ATGGTGAATCTTTGGTTCCTAGGCTGCCATAGGACTCGACTCTCCTCACCCATCTGTATTATTCGACCTCTGCTGCGGTCTTCGGGAAAAAGGAGAATTCGCGTGCAAGGGAAGACTATGGCTATCACAGCCCCAGGGCAGCTTAACGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCTCGTGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATCACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAACAAGTACAAAGGTGGCATCTACATGGTTTTCGAGTACATGGACCATGATTTGACCGGCCTTGCTGATCGTCCAGGAATGAGATTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTACATAGAGATATAAAAGGCTCAAATCTACTAATTGACAATGAAGGAAATCTGAAACTTGCAGATTTTGGGCTTGCTCGATCATTTTCTAATGATCACAATGCAAATCTGACAAATCGTGTCATTACCTTATGGTACAGGCCTCCTGAACTGCTGCTTGGGTCGACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAAATATTTGAGCTATGTGGTGCTCCGGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCGACAAGACCGATGAAGAGACGCATTAGAGAAGTCTTCAGGCATTTTGATCGTCATGCTTTAGAATTGTTGGAGAAGATGCTAACTCTGGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCAGAATATTTTTGGACAGATCCATTACCTTGCGACCCTAAAAGTTTACCCAAGTATGAATCATCACATGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAATTGCAACACCCACAGCATTCACGTCTTCCACCTATTCAGCAGTCGGGGCAAGCACATGCACAGATGCGACCGGTACCAAACCAACCAATTCACGGGTCTCAACCACCAGTTGCTGCAGGCCCTAGCCATCATTTTGGGAAGCCTCGTGGACCGCCAGGTCCTGGTAGGTATCCCTCAGGTGGGAATCCCCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTATGGGAATGCACAATATGCTCAAGGACGGGGTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCGCGAGGTGGAGCTGGAGGTGGCAGTGGTTATGGGGTGGGGGCTCCAAATTACCCCCAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGTCGTGGCTCCAATGTGATGGGTGGAAATCGAAACCAACAATATGGGTGGCAACAGTGA 1668 46.76 MVNLWFLGCHRTRLSSPICIIRPLLRSSGKRRIRVQGKTMAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHSRLPPIQQSGQAHAQMRPVPNQPIHGSQPPVAAGPSHHFGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNAQYAQGRGAPYGSGNMSGAGPRGGAGGGSGYGVGAPNYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 555
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 47124427 47136591 - Lag0010421.1 Lac9g2934 621860
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2934 555 ProSiteProfiles Protein kinase domain profile. 64 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2934 555 CDD STKc_CDK9_like 64 363 - -
Lac9g2934 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2934 555 MobiDBLite consensus disorder prediction 527 555 - -
Lac9g2934 555 PANTHER CELL DIVISION PROTEIN KINASE 64 363 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac9g2934 555 MobiDBLite consensus disorder prediction 376 405 - -
Lac9g2934 555 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524(InterPro)
Lac9g2934 555 MobiDBLite consensus disorder prediction 374 555 - -
Lac9g2934 555 FunFam Cyclin-dependent kinase C-2 51 160 - -
Lac9g2934 555 FunFam Cyclin-dependent kinase C-2 161 403 - -
Lac9g2934 555 SUPERFAMILY Protein kinase-like (PK-like) 58 371 IPR011009 -
Lac9g2934 555 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Lac9g2934 555 Gene3D Transferase(Phosphotransferase) domain 1 161 403 - -
Lac9g2934 555 MobiDBLite consensus disorder prediction 410 426 - -
Lac9g2934 555 Pfam Protein kinase domain 64 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2934 555 SMART serkin_6 64 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0076 Lac-Chr13:566390 Lac9g2934 Lac-Chr9:47124427 2.80E-76 dispersed
Lac2g0052 Lac-Chr2:413014 Lac9g2934 Lac-Chr9:47124427 8.00E-65 dispersed
Lac6g0737 Lac-Chr6:6251344 Lac9g2934 Lac-Chr9:47124427 9.60E-80 dispersed
Lac9g2168 Lac-Chr9:41154653 Lac9g2934 Lac-Chr9:47124427 2.50E-94 dispersed
Lac9g2169 Lac-Chr9:41161338 Lac9g2934 Lac-Chr9:47124427 4.50E-95 dispersed
Lac9g2254 Lac-Chr9:41888913 Lac9g2934 Lac-Chr9:47124427 1.00E-43 dispersed
Lac9g2934 Lac-Chr9:47124427 Lac11g0602 Lac-Chr11:6119699 1.20E-26 dispersed
Lac9g2934 Lac-Chr9:47124427 Lac3g2293 Lac-Chr3:31237655 5.30E-96 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86486 PF00069 Pkinase 5.10E-75 CL0016 Lac PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2934 K08819 - csv:101220936 963.37