Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2934 | ATGGTGAATCTTTGGTTCCTAGGCTGCCATAGGACTCGACTCTCCTCACCCATCTGTATTATTCGACCTCTGCTGCGGTCTTCGGGAAAAAGGAGAATTCGCGTGCAAGGGAAGACTATGGCTATCACAGCCCCAGGGCAGCTTAACGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCTCGTGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATCACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAACAAGTACAAAGGTGGCATCTACATGGTTTTCGAGTACATGGACCATGATTTGACCGGCCTTGCTGATCGTCCAGGAATGAGATTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTACATAGAGATATAAAAGGCTCAAATCTACTAATTGACAATGAAGGAAATCTGAAACTTGCAGATTTTGGGCTTGCTCGATCATTTTCTAATGATCACAATGCAAATCTGACAAATCGTGTCATTACCTTATGGTACAGGCCTCCTGAACTGCTGCTTGGGTCGACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAAATATTTGAGCTATGTGGTGCTCCGGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCGACAAGACCGATGAAGAGACGCATTAGAGAAGTCTTCAGGCATTTTGATCGTCATGCTTTAGAATTGTTGGAGAAGATGCTAACTCTGGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCAGAATATTTTTGGACAGATCCATTACCTTGCGACCCTAAAAGTTTACCCAAGTATGAATCATCACATGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAATTGCAACACCCACAGCATTCACGTCTTCCACCTATTCAGCAGTCGGGGCAAGCACATGCACAGATGCGACCGGTACCAAACCAACCAATTCACGGGTCTCAACCACCAGTTGCTGCAGGCCCTAGCCATCATTTTGGGAAGCCTCGTGGACCGCCAGGTCCTGGTAGGTATCCCTCAGGTGGGAATCCCCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTATGGGAATGCACAATATGCTCAAGGACGGGGTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCGCGAGGTGGAGCTGGAGGTGGCAGTGGTTATGGGGTGGGGGCTCCAAATTACCCCCAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGTCGTGGCTCCAATGTGATGGGTGGAAATCGAAACCAACAATATGGGTGGCAACAGTGA | 1668 | 46.76 | MVNLWFLGCHRTRLSSPICIIRPLLRSSGKRRIRVQGKTMAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHSRLPPIQQSGQAHAQMRPVPNQPIHGSQPPVAAGPSHHFGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNAQYAQGRGAPYGSGNMSGAGPRGGAGGGSGYGVGAPNYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ | 555 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 47124427 | 47136591 | - | Lag0010421.1 | Lac9g2934 | 621860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2934 | 555 | ProSiteProfiles | Protein kinase domain profile. | 64 | 363 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac9g2934 | 555 | CDD | STKc_CDK9_like | 64 | 363 | - | - | |
Lac9g2934 | 555 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 198 | 210 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac9g2934 | 555 | MobiDBLite | consensus disorder prediction | 527 | 555 | - | - | |
Lac9g2934 | 555 | PANTHER | CELL DIVISION PROTEIN KINASE | 64 | 363 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Lac9g2934 | 555 | MobiDBLite | consensus disorder prediction | 376 | 405 | - | - | |
Lac9g2934 | 555 | ProSitePatterns | Protein kinases ATP-binding region signature. | 70 | 93 | IPR017441 | GO:0005524(InterPro) | |
Lac9g2934 | 555 | MobiDBLite | consensus disorder prediction | 374 | 555 | - | - | |
Lac9g2934 | 555 | FunFam | Cyclin-dependent kinase C-2 | 51 | 160 | - | - | |
Lac9g2934 | 555 | FunFam | Cyclin-dependent kinase C-2 | 161 | 403 | - | - | |
Lac9g2934 | 555 | SUPERFAMILY | Protein kinase-like (PK-like) | 58 | 371 | IPR011009 | - | |
Lac9g2934 | 555 | Gene3D | Phosphorylase Kinase; domain 1 | 51 | 160 | - | - | |
Lac9g2934 | 555 | Gene3D | Transferase(Phosphotransferase) domain 1 | 161 | 403 | - | - | |
Lac9g2934 | 555 | MobiDBLite | consensus disorder prediction | 410 | 426 | - | - | |
Lac9g2934 | 555 | Pfam | Protein kinase domain | 64 | 363 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac9g2934 | 555 | SMART | serkin_6 | 64 | 363 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0076 | Lac-Chr13:566390 | Lac9g2934 | Lac-Chr9:47124427 | 2.80E-76 | dispersed | |
Lac2g0052 | Lac-Chr2:413014 | Lac9g2934 | Lac-Chr9:47124427 | 8.00E-65 | dispersed | |
Lac6g0737 | Lac-Chr6:6251344 | Lac9g2934 | Lac-Chr9:47124427 | 9.60E-80 | dispersed | |
Lac9g2168 | Lac-Chr9:41154653 | Lac9g2934 | Lac-Chr9:47124427 | 2.50E-94 | dispersed | |
Lac9g2169 | Lac-Chr9:41161338 | Lac9g2934 | Lac-Chr9:47124427 | 4.50E-95 | dispersed | |
Lac9g2254 | Lac-Chr9:41888913 | Lac9g2934 | Lac-Chr9:47124427 | 1.00E-43 | dispersed | |
Lac9g2934 | Lac-Chr9:47124427 | Lac11g0602 | Lac-Chr11:6119699 | 1.20E-26 | dispersed | |
Lac9g2934 | Lac-Chr9:47124427 | Lac3g2293 | Lac-Chr3:31237655 | 5.30E-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86486 | PF00069 | Pkinase | 5.10E-75 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2934 | K08819 | - | csv:101220936 | 963.37 |