Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2955 ATGGCCACGAGTTTGGCCCATTATCACAGACCCGAGTTTCTCACCATCGCCGTCGCTGTCGTTGCTATCGGCGTTGGCACTGCCTACTATTTCTACATCACCAAGAAATCCAAGGCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGCACGCAGCTTAGCCATAATGTGGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAGTCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGAGGGAAAGATAGCAAAGGTGAAGATGTTGTGAAACCGTACACTCCAACCACTTTGGATACTGATGTTGGGTACTTCGACTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCCAAGGGACGTTTCAAGTACGAGGCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTACAAGAGCAATACTAGAAAATCCCGTAGACCGAACTAATGTACATCTTATATATGCTAATGTTACTTATGAAGACATTCTTCTAAAGGAAGAACTGGATAGCCTTGCAACTAGGTTTCCCTCCCGCTTCACCATCTACTATGTTCTCAATCAGCCTCCTGAAGGATGGGATGGTGGCATTGGCTTTGTAACTGAGGAAATGATACGACAACGTTGTCCTGCACCATCCCCTAATGTTCGGGTGGATCTTGAGGTGCGGACCACCCCCATGAACAAAGTTATGGCTGCTTACCTCAACAGCATTGGCTACACTTCCCAAATGCAGTTCCAGTTCTAA 852 46.95 MATSLAHYHRPEFLTIAVAVVAIGVGTAYYFYITKKSKAKGCLDPDNFKEFKLVKRTQLSHNVAKFRFSLPTPTSVLGLPIGQHMSCRGKDSKGEDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEANEVEAFGMLAGGTGITPMFQVTRAILENPVDRTNVHLIYANVTYEDILLKEELDSLATRFPSRFTIYYVLNQPPEGWDGGIGFVTEEMIRQRCPAPSPNVRVDLEVRTTPMNKVMAAYLNSIGYTSQMQFQF 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47301682 47304809 - Lag0010442.1 Lac9g2955 621881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2955 283 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Lac9g2955 283 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Lac9g2955 283 FunFam NADH-cytochrome b5 reductase 41 140 - -
Lac9g2955 283 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491(InterPro)
Lac9g2955 283 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491(InterPro)
Lac9g2955 283 Gene3D - 140 283 IPR039261 -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 99 106 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 158 177 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 77 88 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 135 149 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 196 207 - -
Lac9g2955 283 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 253 IPR039261 -
Lac9g2955 283 Gene3D Translation factors 41 139 - -
Lac9g2955 283 Pfam Oxidoreductase NAD-binding domain 159 247 IPR001433 GO:0016491(InterPro)
Lac9g2955 283 PANTHER NADH-CYTOCHROME B5 REDUCTASE 18 283 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lac9g2955 283 CDD cyt_b5_reduct_like 51 283 - -
Lac9g2955 283 FunFam NADH-cytochrome b5 reductase 140 283 - -
Lac9g2955 283 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2955 K00326 - - csv:101219272 493.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2390 Lac-Chr10:36703378 Lac9g2955 Lac-Chr9:47301682 6.80E-91 dispersed
Lac6g2950 Lac-Chr6:47099304 Lac9g2955 Lac-Chr9:47301682 6.00E-47 dispersed
Lac9g2955 Lac-Chr9:47301682 Lac1g1605 Lac-Chr1:37275908 9.60E-110 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86