Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2955 ATGGCCACGAGTTTGGCCCATTATCACAGACCCGAGTTTCTCACCATCGCCGTCGCTGTCGTTGCTATCGGCGTTGGCACTGCCTACTATTTCTACATCACCAAGAAATCCAAGGCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGCACGCAGCTTAGCCATAATGTGGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAGTCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGAGGGAAAGATAGCAAAGGTGAAGATGTTGTGAAACCGTACACTCCAACCACTTTGGATACTGATGTTGGGTACTTCGACTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCCAAGGGACGTTTCAAGTACGAGGCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTACAAGAGCAATACTAGAAAATCCCGTAGACCGAACTAATGTACATCTTATATATGCTAATGTTACTTATGAAGACATTCTTCTAAAGGAAGAACTGGATAGCCTTGCAACTAGGTTTCCCTCCCGCTTCACCATCTACTATGTTCTCAATCAGCCTCCTGAAGGATGGGATGGTGGCATTGGCTTTGTAACTGAGGAAATGATACGACAACGTTGTCCTGCACCATCCCCTAATGTTCGGGTGGATCTTGAGGTGCGGACCACCCCCATGAACAAAGTTATGGCTGCTTACCTCAACAGCATTGGCTACACTTCCCAAATGCAGTTCCAGTTCTAA 852 46.95 MATSLAHYHRPEFLTIAVAVVAIGVGTAYYFYITKKSKAKGCLDPDNFKEFKLVKRTQLSHNVAKFRFSLPTPTSVLGLPIGQHMSCRGKDSKGEDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEANEVEAFGMLAGGTGITPMFQVTRAILENPVDRTNVHLIYANVTYEDILLKEELDSLATRFPSRFTIYYVLNQPPEGWDGGIGFVTEEMIRQRCPAPSPNVRVDLEVRTTPMNKVMAAYLNSIGYTSQMQFQF 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47301682 47304809 - Lag0010442.1 Lac9g2955 621881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2955 283 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Lac9g2955 283 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Lac9g2955 283 FunFam NADH-cytochrome b5 reductase 41 140 - -
Lac9g2955 283 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491(InterPro)
Lac9g2955 283 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491(InterPro)
Lac9g2955 283 Gene3D - 140 283 IPR039261 -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 99 106 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 158 177 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 77 88 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 135 149 - -
Lac9g2955 283 PRINTS Cytochrome B5 reductase signature 196 207 - -
Lac9g2955 283 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 253 IPR039261 -
Lac9g2955 283 Gene3D Translation factors 41 139 - -
Lac9g2955 283 Pfam Oxidoreductase NAD-binding domain 159 247 IPR001433 GO:0016491(InterPro)
Lac9g2955 283 PANTHER NADH-CYTOCHROME B5 REDUCTASE 18 283 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lac9g2955 283 CDD cyt_b5_reduct_like 51 283 - -
Lac9g2955 283 FunFam NADH-cytochrome b5 reductase 140 283 - -
Lac9g2955 283 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2390 Lac-Chr10:36703378 Lac9g2955 Lac-Chr9:47301682 6.80E-91 dispersed
Lac6g2950 Lac-Chr6:47099304 Lac9g2955 Lac-Chr9:47301682 6.00E-47 dispersed
Lac9g2955 Lac-Chr9:47301682 Lac1g1605 Lac-Chr1:37275908 9.60E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2955 K00326 - csv:101219272 493.426