Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0026 ATGGGTAAGGAGAAGGTTCACATTAACATTGTGGTTATTGGCCACGTCGACTCTGGCAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCCTTCAAGTATGCCTGGGTGTTGGACAAGCTGAAGGCTGAACGTGAGCGTGGTATTACCATTGACATTGCCCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCAGGCCATCGTGACTTCATCAAGAACATGATTACTGGTACTTCCCAAGCTGACTGTGCTGTTCTTATCATTGACTCAACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAGCATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACTCCCAAATACTCCAAGTCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAACCTCGACTGGTACAAGGGTCCAACCCTTCTTGAGGCACTCGACCAGGTCCATGAGCCCAAGAGACCATCTGACAAGCCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACCGTCCCAGTGGGTCGTGTTGAAACCGGAATTCTAAAACCTGGTATGGTCGTCACCTTTGCTCCATCTGGATTGACCACTGAAGTAAAGTCTGTAGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTAGGGTTCAACGTGAAGAATGTCGCCGTGAAGGATCTCAAGCGTGGCTTCGTTGCCTCAAATTCCAAGGATGATCCCGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGCCAGATCGGAAATGGCTATGCCCCTGTTCTCGACTGCCACACCTCTCACATTGCTGTCAAATTTGCTGAGATCTTGACCAAGATCGACAGGCGATCTGGTAAAGAACTCGAGAAAGAGCCCAAGTTCTTGAAAAACGGCGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACCTTCTCCGAGTACCCCCCACTCGGGCGATTTGCCGTGAGAGACATGCGTCAAACTGTGGCCGTCGGTGTCATCAAGAGCGTCGAGAAGAAGGATCCAAGCGGTGCCAAGGTCACCAAGTCTGCTGCTAAGAAATCTGGTAAGTGA 1350 49.26 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 419023 420930 + Maker00001936 Lcy10g0026 643537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0026 449 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Lcy10g0026 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g0026 449 CDD EF1_alpha 9 227 - -
Lcy10g0026 449 FunFam Elongation factor 1-alpha 323 430 - -
Lcy10g0026 449 FunFam Elongation factor 1-alpha 1 226 - -
Lcy10g0026 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Lcy10g0026 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Lcy10g0026 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Lcy10g0026 449 SUPERFAMILY Translation proteins 226 321 IPR009000 -
Lcy10g0026 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lcy10g0026 449 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Lcy10g0026 449 CDD EF1_alpha_II 230 320 - -
Lcy10g0026 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Lcy10g0026 449 CDD EF1_alpha_III 323 426 - -
Lcy10g0026 449 Gene3D Translation factors 229 316 - -
Lcy10g0026 449 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Lcy10g0026 449 Gene3D Translation factors 323 430 - -
Lcy10g0026 449 FunFam Elongation factor 1-alpha 229 316 - -
Lcy10g0026 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g0026 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g0026 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g0026 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g0026 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g0026 449 Gene3D - 1 228 IPR027417 -
Lcy10g0026 449 Pfam Elongation factor Tu GTP binding domain 6 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0026 Lcy-Chr10:419023 Lcy8g1885 Lcy-Chr8:45144757 0 dispersed
Lcy10g0026 Lcy-Chr10:419023 Lcy10g1782 Lcy-Chr10:42182580 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0026 K03231 - csv:105434427 895.19