Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0046 ATGTCCATCCTGCCTTCCCAAATCCACGGTTCCACTTCAGCGTCTTCTTCTTCTTCACCTTCCTCTCTAAACCCTAATTCCCACCATGGACATGGACATGGACATGGACCCGACCCCTTCCTCTCTCACTCTCAACCCCCTCCCTCTTTCTCCCCTCTACGGATCTCCGATCCCGAATCTTCTCTCCGGGATTCCTGCGACGCTTCAGGTTCGTCGACTCAACCTGCAAATGATGCTGAATCTTCCAAGAAGGTAAGTGAATTAGAGACCCTAAATGACTTGAAGATGCCAGCTCGTCAAAACACTGAAACCCATTTGCAGTGCCAATCTGGCAAACAAGAGGGTGGATCAATCATGCCTGGGAGTAAAATATCATCTACTCTAGTTTCTTCTCATGATCAACAAAGTGCTAGGTCTGCAAACTCTCATGGCAACAACAAACGCCCGGCTGGAAGAAAAGCCCAAATCACCAATGGCAACCATTTGCTTAATTTTCAATATGATCCCATTTTTCGTCCTCGCCCTCGAGCCAGAGCTCCTCCTCCTAGAAGACCACATAAGATAAAGCCATACAACAAGGATCTCTTTCTCCAGGCTAATTACAAATTTGTGGTATTAGATTCAGGTTATCATACACCTGAGTATTTGGATCCTGATAAAATGTTGCGTTGGGAGGATATCATATGTGTAAGGTATTCTACACCATCGTTGGTCCAATGTCCTATTTGTCTGGAACATCCACTCTGTCCTCAAATTACCTCATGTGGACATATTTATTGTTTCCCATGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCATAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGTTGTCTCCAAAGGATTTATACACTGTCCATGTTGAGCTTTTAAAGCAATATTCTGTCGGTGATGCTATAGATTTTATGCTTTTAACTCGGCAAAAAAATTCATTCACCATATCATTCAAGGATAAACAAGAGGATGATATCAGTTCAAGTGACAACGATGAAACCTATGATTCTTTTTCAAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGAAAGCAATATCTGATCTAGATGCCTGGTTAGCAAAAGCAGAAGCAGGGCAAGTAGATGATCTCGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTGGAGCAGAGAAAGAAGTATTGGAATGAACATCAGGCTTGTTTTAAGCACAATGACTGTCAGATAGGATCTCACGTGCTTCTGCCAATTGATAGTGCTAGGAATGCTGGTCCTGGAGTGTGCAGTTCTGGACATGAGGCTTCTTCCATTGATAGTAATGATGGTTGCAAGTTTCCAGGAAATGTAGTGCAAGATAAGTTGGATTATTCTACTCCTGTGGGTCAGACTGAGGCTGTGGATGAATCTTTAGAACTCCAACAAAACTCAAACGAAATTAGAGATGCAAAGGACAAGGACTCATACAATTTTTTCCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAACATTATGGGAGCTACGATAGGCTTCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACGGTGACTCAGACTGAGGCCACAAGAAGGCGTTATCGTTACTTAAGTCATTTTTCTTTAACAACATCATTTCAGCTCTGTGAAATTGATTTGACCAACCTATTGCCTTCGTCCTCCATGATCCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAGAAAGATGCAAAGGGAGAAGAACAAAGCAGAAGCTGCTTCAACGTGTTCTTTGTCAATGATGGCCAGTTCGGGAAGTTCCTATCATTATGATACTCCAAAGCTTTCCCTGGATGACTTTGAAGCTTTAGGAAGTTCTCCTGTGGCATCATCTAGCCCTCCTGTTGGGGGGAGGCAACTGTTCTCAAGCGTTACAAGACTTGGTTTCGCAGCCGCACACGATTCTCCATCCTTGAGAGTTGAGGAAACTGATTCACTGCACGTTAATGAAGTGAGAAGTGATTTATCTGGTGCAAATGACATACAGAACGCAACCCCGTCATTCGCAAACGTAATATCGAGAGCGAAGTCCGGAGGAAGTACAGAATCTCCAAAGGCAAATGAAGTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTCTGTTATCCACAGCGGGCGGTCGACGCTATTGA 2241 43.2 MSILPSQIHGSTSASSSSSPSSLNPNSHHGHGHGHGPDPFLSHSQPPPSFSPLRISDPESSLRDSCDASGSSTQPANDAESSKKVSELETLNDLKMPARQNTETHLQCQSGKQEGGSIMPGSKISSTLVSSHDQQSARSANSHGNNKRPAGRKAQITNGNHLLNFQYDPIFRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDSGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGKEDHKGDCWKKCPLCFVMLSPKDLYTVHVELLKQYSVGDAIDFMLLTRQKNSFTISFKDKQEDDISSSDNDETYDSFSKFIFTSDVDLSVRKAISDLDAWLAKAEAGQVDDLEKLPYVCAALEQLEQRKKYWNEHQACFKHNDCQIGSHVLLPIDSARNAGPGVCSSGHEASSIDSNDGCKFPGNVVQDKLDYSTPVGQTEAVDESLELQQNSNEIRDAKDKDSYNFFQATDGQHIILHPLNMKCLLQHYGSYDRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLARKMQREKNKAEAASTCSLSMMASSGSSYHYDTPKLSLDDFEALGSSPVASSSPPVGGRQLFSSVTRLGFAAAHDSPSLRVEETDSLHVNEVRSDLSGANDIQNATPSFANVISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 691183 697460 + Maker00001657 Lcy10g0046 643557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0046 746 MobiDBLite consensus disorder prediction 95 158 - -
Lcy10g0046 746 CDD RING-HC_RNF10 238 295 - -
Lcy10g0046 746 MobiDBLite consensus disorder prediction 47 81 - -
Lcy10g0046 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 335 IPR013083 -
Lcy10g0046 746 ProSiteProfiles Zinc finger RING-type profile. 240 286 IPR001841 -
Lcy10g0046 746 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Lcy10g0046 746 MobiDBLite consensus disorder prediction 711 746 - -
Lcy10g0046 746 SUPERFAMILY RING/U-box 235 300 - -
Lcy10g0046 746 SMART ring_2 240 286 IPR001841 -
Lcy10g0046 746 Pfam Zinc finger, C3HC4 type (RING finger) 240 286 IPR018957 GO:0046872(InterPro)
Lcy10g0046 746 Coils Coil 583 606 - -
Lcy10g0046 746 MobiDBLite consensus disorder prediction 1 28 - -
Lcy10g0046 746 PANTHER RING FINGER 10 FAMILY MEMBER 72 746 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
Lcy10g0046 746 MobiDBLite consensus disorder prediction 1 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0046 Lcy-Chr10:691183 Lcy5g0587 Lcy-Chr5:6701722 1.48E-06 dispersed
Lcy10g0046 Lcy-Chr10:691183 Lcy9g1291 Lcy-Chr9:37595083 4.09E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0046 K26979 - csv:101203987 1215.29