Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0046 | ATGTCCATCCTGCCTTCCCAAATCCACGGTTCCACTTCAGCGTCTTCTTCTTCTTCACCTTCCTCTCTAAACCCTAATTCCCACCATGGACATGGACATGGACATGGACCCGACCCCTTCCTCTCTCACTCTCAACCCCCTCCCTCTTTCTCCCCTCTACGGATCTCCGATCCCGAATCTTCTCTCCGGGATTCCTGCGACGCTTCAGGTTCGTCGACTCAACCTGCAAATGATGCTGAATCTTCCAAGAAGGTAAGTGAATTAGAGACCCTAAATGACTTGAAGATGCCAGCTCGTCAAAACACTGAAACCCATTTGCAGTGCCAATCTGGCAAACAAGAGGGTGGATCAATCATGCCTGGGAGTAAAATATCATCTACTCTAGTTTCTTCTCATGATCAACAAAGTGCTAGGTCTGCAAACTCTCATGGCAACAACAAACGCCCGGCTGGAAGAAAAGCCCAAATCACCAATGGCAACCATTTGCTTAATTTTCAATATGATCCCATTTTTCGTCCTCGCCCTCGAGCCAGAGCTCCTCCTCCTAGAAGACCACATAAGATAAAGCCATACAACAAGGATCTCTTTCTCCAGGCTAATTACAAATTTGTGGTATTAGATTCAGGTTATCATACACCTGAGTATTTGGATCCTGATAAAATGTTGCGTTGGGAGGATATCATATGTGTAAGGTATTCTACACCATCGTTGGTCCAATGTCCTATTTGTCTGGAACATCCACTCTGTCCTCAAATTACCTCATGTGGACATATTTATTGTTTCCCATGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCATAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGTTGTCTCCAAAGGATTTATACACTGTCCATGTTGAGCTTTTAAAGCAATATTCTGTCGGTGATGCTATAGATTTTATGCTTTTAACTCGGCAAAAAAATTCATTCACCATATCATTCAAGGATAAACAAGAGGATGATATCAGTTCAAGTGACAACGATGAAACCTATGATTCTTTTTCAAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGAAAGCAATATCTGATCTAGATGCCTGGTTAGCAAAAGCAGAAGCAGGGCAAGTAGATGATCTCGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTGGAGCAGAGAAAGAAGTATTGGAATGAACATCAGGCTTGTTTTAAGCACAATGACTGTCAGATAGGATCTCACGTGCTTCTGCCAATTGATAGTGCTAGGAATGCTGGTCCTGGAGTGTGCAGTTCTGGACATGAGGCTTCTTCCATTGATAGTAATGATGGTTGCAAGTTTCCAGGAAATGTAGTGCAAGATAAGTTGGATTATTCTACTCCTGTGGGTCAGACTGAGGCTGTGGATGAATCTTTAGAACTCCAACAAAACTCAAACGAAATTAGAGATGCAAAGGACAAGGACTCATACAATTTTTTCCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAACATTATGGGAGCTACGATAGGCTTCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACGGTGACTCAGACTGAGGCCACAAGAAGGCGTTATCGTTACTTAAGTCATTTTTCTTTAACAACATCATTTCAGCTCTGTGAAATTGATTTGACCAACCTATTGCCTTCGTCCTCCATGATCCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAGAAAGATGCAAAGGGAGAAGAACAAAGCAGAAGCTGCTTCAACGTGTTCTTTGTCAATGATGGCCAGTTCGGGAAGTTCCTATCATTATGATACTCCAAAGCTTTCCCTGGATGACTTTGAAGCTTTAGGAAGTTCTCCTGTGGCATCATCTAGCCCTCCTGTTGGGGGGAGGCAACTGTTCTCAAGCGTTACAAGACTTGGTTTCGCAGCCGCACACGATTCTCCATCCTTGAGAGTTGAGGAAACTGATTCACTGCACGTTAATGAAGTGAGAAGTGATTTATCTGGTGCAAATGACATACAGAACGCAACCCCGTCATTCGCAAACGTAATATCGAGAGCGAAGTCCGGAGGAAGTACAGAATCTCCAAAGGCAAATGAAGTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTCTGTTATCCACAGCGGGCGGTCGACGCTATTGA | 2241 | 43.2 | MSILPSQIHGSTSASSSSSPSSLNPNSHHGHGHGHGPDPFLSHSQPPPSFSPLRISDPESSLRDSCDASGSSTQPANDAESSKKVSELETLNDLKMPARQNTETHLQCQSGKQEGGSIMPGSKISSTLVSSHDQQSARSANSHGNNKRPAGRKAQITNGNHLLNFQYDPIFRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDSGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGKEDHKGDCWKKCPLCFVMLSPKDLYTVHVELLKQYSVGDAIDFMLLTRQKNSFTISFKDKQEDDISSSDNDETYDSFSKFIFTSDVDLSVRKAISDLDAWLAKAEAGQVDDLEKLPYVCAALEQLEQRKKYWNEHQACFKHNDCQIGSHVLLPIDSARNAGPGVCSSGHEASSIDSNDGCKFPGNVVQDKLDYSTPVGQTEAVDESLELQQNSNEIRDAKDKDSYNFFQATDGQHIILHPLNMKCLLQHYGSYDRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLARKMQREKNKAEAASTCSLSMMASSGSSYHYDTPKLSLDDFEALGSSPVASSSPPVGGRQLFSSVTRLGFAAAHDSPSLRVEETDSLHVNEVRSDLSGANDIQNATPSFANVISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY | 746 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 691183 | 697460 | + | Maker00001657 | Lcy10g0046 | 643557 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0046 | 746 | MobiDBLite | consensus disorder prediction | 95 | 158 | - | - | |
Lcy10g0046 | 746 | CDD | RING-HC_RNF10 | 238 | 295 | - | - | |
Lcy10g0046 | 746 | MobiDBLite | consensus disorder prediction | 47 | 81 | - | - | |
Lcy10g0046 | 746 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 335 | IPR013083 | - | |
Lcy10g0046 | 746 | ProSiteProfiles | Zinc finger RING-type profile. | 240 | 286 | IPR001841 | - | |
Lcy10g0046 | 746 | ProSitePatterns | Zinc finger RING-type signature. | 255 | 264 | IPR017907 | - | |
Lcy10g0046 | 746 | MobiDBLite | consensus disorder prediction | 711 | 746 | - | - | |
Lcy10g0046 | 746 | SUPERFAMILY | RING/U-box | 235 | 300 | - | - | |
Lcy10g0046 | 746 | SMART | ring_2 | 240 | 286 | IPR001841 | - | |
Lcy10g0046 | 746 | Pfam | Zinc finger, C3HC4 type (RING finger) | 240 | 286 | IPR018957 | GO:0046872(InterPro) | |
Lcy10g0046 | 746 | Coils | Coil | 583 | 606 | - | - | |
Lcy10g0046 | 746 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lcy10g0046 | 746 | PANTHER | RING FINGER 10 FAMILY MEMBER | 72 | 746 | IPR039739 | GO:0000976(PANTHER)|GO:0045944(PANTHER) | |
Lcy10g0046 | 746 | MobiDBLite | consensus disorder prediction | 1 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0046 | Lcy-Chr10:691183 | Lcy5g0587 | Lcy-Chr5:6701722 | 1.48E-06 | dispersed | |
Lcy10g0046 | Lcy-Chr10:691183 | Lcy9g1291 | Lcy-Chr9:37595083 | 4.09E-08 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0046 | K26979 | - | csv:101203987 | 1215.29 |