Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0049 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGCCGACCACGACGACGCCGCTTCTTGGACTAGAACCACCAACCACCACGACCACGACCACGACGTCGCCATTGCCGCCTCCATTTCCTCCTTCAAATCCATGCTCGAATCCGACTGGTACATCAACTCTACCACTCCTCTCAATCCCTCTCACCATGATTTCCATTGCCCAGATGCCTTCTCCTCCAATCCCACCGATAACTTGCTCCTACACCCCATCGATTCCTCCTCCTCCTGCTCTCCCTCCCACGCTTTTGCTCTCGATCCTTCCCATTCCCACTCTATCTTGCCTTCTCACAAATCCTGTTTCTCTTCTCTTCTTAATGTCGTTTGCGGGACTAGTTTTGATAATGGCTTCGATTTGGGCGGCGACACTGGCCTGCTTGGATCTTACCAGGGGAACCAAGCTTCCAATTCCTCCCTGTTGATGGGATTCGCCGGCATTTCGTCTCTTCCTCAAATCGGTAATCAGGAACTTGGCTTGAACCACTCCGACTTTCCGGCGACTCGGTTGCTTCCGGTCGCCGATAACCCTCCCGCACTCGGCGCTGGATTTAATCCGCCGGCGGCCTTCGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAGGTGTTCCCGCAGGTCGGCGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGAGCTGATAAACTGGAGAATTTGGAGGTTTCGGGTTTGAAATTAGGAGAAGGCTCAATGTGGACGGCGAATTTGGAGAAGCTGAGGAACAAGAACGGCGACGAGGAAATTGAGGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAAGCCAATGAATATAATAAGCAAGAGGTCAATGCTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACCGTAACCGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAGAATCTCATGGCGGAGCGGCGGCGGAGAAAGAAGCTGAACGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGGTACGGATTCAGGCTTTTGCTCTCGATCTCATGATGGATAGAGCTTCAATACTTGGAGATGCCATTGATTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTTCATAATGAACTTGAGTCAACTCCTCCTGGTTCTATGTTGCAGCCTTCTGCAAGCTTCCACCCTTTGACGCCAACGCTGCCGACTCTTCCCTGTCGTGTCAAAGAAGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAAAACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCAGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCCTTGGATGTGTTCCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATAAAGGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTATTTAA 1623 51.63 MLPKSTGILWLDADHDDAASWTRTTNHHDHDHDVAIAASISSFKSMLESDWYINSTTPLNPSHHDFHCPDAFSSNPTDNLLLHPIDSSSSCSPSHAFALDPSHSHSILPSHKSCFSSLLNVVCGTSFDNGFDLGGDTGLLGSYQGNQASNSSLLMGFAGISSLPQIGNQELGLNHSDFPATRLLPVADNPPALGAGFNPPAAFESFDGCGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGADKLENLEVSGLKLGEGSMWTANLEKLRNKNGDEEIEDGSVDVSRLNYDSDEANEYNKQEVNANAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKVRIQAFALDLMMDRASILGDAIDYLKELLQRINDLHNELESTPPGSMLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVI 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 714595 717797 - Maker00001941 Lcy10g0049 643560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0049 540 Coils Coil 392 412 - -
Lcy10g0049 540 SMART finulus 344 404 IPR011598 GO:0046983(InterPro)
Lcy10g0049 540 Pfam Helix-loop-helix DNA-binding domain 345 398 IPR011598 GO:0046983(InterPro)
Lcy10g0049 540 ProSiteProfiles ACT domain profile. 468 540 IPR002912 -
Lcy10g0049 540 CDD bHLH_AtAMS_like 341 417 - -
Lcy10g0049 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 398 IPR011598 GO:0046983(InterPro)
Lcy10g0049 540 CDD ACT_UUR-ACR-like 469 529 - -
Lcy10g0049 540 MobiDBLite consensus disorder prediction 313 338 - -
Lcy10g0049 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 413 IPR036638 GO:0046983(InterPro)
Lcy10g0049 540 Gene3D - 332 412 IPR036638 GO:0046983(InterPro)
Lcy10g0049 540 MobiDBLite consensus disorder prediction 313 331 - -
Lcy10g0049 540 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 295 535 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy10g0049 540 Pfam Plant bHLH transcription factor, ACT-like domain 457 530 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0049 Lcy-Chr10:714595 Lcy5g2093 Lcy-Chr5:43991297 2.00E-162 dispersed
Lcy10g0049 Lcy-Chr10:714595 Lcy13g1454 Lcy-Chr13:33099195 4.91E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18922 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0049 - - - 0.0