Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0054 ATGGCCATCTCAGAATCTCAATCCCGTTCGTCTCTGATCCCTAATTTCCTCTATTCCTCTTCGGCCATTCCATTCGAGAAGATGCTTTGCTCGAATGTTCCTTGTGGATCGCCATCGCCGGTCGTCGAAGCTGCATCTTCCTCCACTTCGATGAAGGCCTTTTCGATTCCGTCTCCGAGTGAACCGAGGAAGAAACTGGAGATGTATTCGCCGGCGTTCTATGCCGCCTGTGCCGTCGGTGGAAGCCTTAGCTGTGGTCTCACTCACATGGCCGTCACTCCTCTCGATCTTGTCAAGTGCAATATGCAGATTGACCCAGTGAAATACAAGAGCATTTCATCTGGTTTTGGAGTTCTGCTAAAGGAGCAAGGAATCAGGGGCCTCTTTAGGGGTTGGGCGCCAACTCTAATAGGTTACAGTGCTCAAGGTGCTTGCAAGTATGGAATATATGAATTCTTTAAGAAATACTATTCCGATATAGCTGGACCAGAGTATGCCGCAAAGTACAAGACCTTGATCTATCTGGCTGGCTCTGCATCTGCTGAAGTGATTGCCGATGTTGCACTTTGCCCCTTTGAAGCCGTTAAAGTTAGAGTTCAAACTCAGCCAGGTTTTGCCAGAGGTTTATCAGATGGCCTTCCCAAATTCGTCAGATCTGAAGGTGCCCTTGGGTTGTATAAGGGTCTTGTTCCTCTTTGGGGGCGTCAGATCCCATATACAATGATGAAGTTTGCAACATTTGAGAATCTCGTGGAGCTCATCTACAAGCATGTAATTCCCAAGCCAAAGAACAAATGCAGCAGCGCCTTGCAGCTCGGCGTCAGCTTTGCTGGTGGATATATTGCTGGCGTCTCTTGTGCTATCGTTTCTCATCCTGCTGATAATCTGGTCTCTTTCCTCAATAATGCTAAAGGGGCTACCGCTGTTAAGAAGCTTGGACTATGGGGTCTCTTCACTAGAGGATTGCCTCTCCGTATAGTCATGGTTGGAACCCTCACTGGAGCTCAGTGGGTCATCTACGACGCATTCAAAGTTTTTGTTGGATTGCCAACTACCGGTGGGGTTGCCCCTGCCGCCACCGCCATTGCTGCATCGCCAGAACTTGCAAGTGCGTAA 1116 48.84 MAISESQSRSSLIPNFLYSSSAIPFEKMLCSNVPCGSPSPVVEAASSSTSMKAFSIPSPSEPRKKLEMYSPAFYAACAVGGSLSCGLTHMAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGLFRGWAPTLIGYSAQGACKYGIYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGLVPLWGRQIPYTMMKFATFENLVELIYKHVIPKPKNKCSSALQLGVSFAGGYIAGVSCAIVSHPADNLVSFLNNAKGATAVKKLGLWGLFTRGLPLRIVMVGTLTGAQWVIYDAFKVFVGLPTTGGVAPAATAIAASPELASA 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 784161 790262 + Maker00001968 Lcy10g0054 643565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0054 371 FunFam Phosphate carrier protein, mitochondrial 72 347 - -
Lcy10g0054 371 Pfam Mitochondrial carrier protein 170 257 IPR018108 -
Lcy10g0054 371 Pfam Mitochondrial carrier protein 74 159 IPR018108 -
Lcy10g0054 371 SUPERFAMILY Mitochondrial carrier 74 342 IPR023395 -
Lcy10g0054 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 253 IPR018108 -
Lcy10g0054 371 Gene3D Mitochondrial carrier domain 166 348 IPR023395 -
Lcy10g0054 371 Gene3D Mitochondrial carrier domain 38 165 IPR023395 -
Lcy10g0054 371 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 55 356 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Lcy10g0054 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 72 156 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0054 Lcy-Chr10:784161 Lcy6g2221 Lcy-Chr6:46640125 3.76E-12 dispersed
Lcy10g1034 Lcy-Chr10:32454129 Lcy10g0054 Lcy-Chr10:784161 7.04E-199 transposed
Lcy4g0439 Lcy-Chr4:5344438 Lcy10g0054 Lcy-Chr10:784161 6.08E-100 transposed
Lcy10g0054 Lcy-Chr10:784161 Lcy2g0022 Lcy-Chr2:185661 1.83E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0054 K15102 - csv:101203018 592.038