Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0080 ATGGCCCGACCCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCAGCTTGCGCGGGCCGAGCCCGGTGGCCTCTTTTCGGTCCCTGATGTCCCGAATCGCCCCGTTTCCACCTGGTTCGTCCCGAAACACCTCCGGGTTCCTAAAAACCCTAGGATGACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGAACAAGAAGAAGAAGAAGAAAAATCAATCATGGGTGAGAACAAACCAGCTGAAATCAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGAAAGAAACAGTTAGCTCCAAAGAGAAGCTCCAACAAAGATCGTCACACCAAAGTGGAAGGGCGAGGGCGAAGAATCCGTATGCCGGCTCTATGTGCGGCGAGGATTTTTCAATTGACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGCTGCTGCAGCAGGCGGAGCCGTCGATAATCGCCGCCACAGGCACTGGAACCATCCCGGCTTCGGCTCTAGCTGCGGCGGCGGGCTCTGTTTCGCAACAGGGTGCTTCTCTCTCGGCCGGATTGCACCAAAAATTGGAGGAATTGGGAGGTGGCGGGTCCAGTAGGGCCAATTGGGGCAATTTGGGGCGACCCCATTTGGCCGCCACAGCCACAGGGCTTTGGCCCTCATCTGTCAGTGGCTTTGGCTTTCAGTCCTCAACTGCTGCTGCTGCTGCTGCTGCTCAATCAGCTGCTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGCTTCCCACCCTTTGACTTACCCCCCTCCAACATGAGTCCTATGAGTTTCACCTCCATTTTAGGTGGAAACACTCAACAGTTACCTGGTTTAGAGCTTGGATTGTCCCAACAAGATGGCCATATTGGGGTTATAAATCCTCAAGCATTGAACCAGATTTACCAACAGATGGGACAGGCTAGAGTTCATCAGCATCATCATCATCATCATCATCAACAGCATCAGCAACCTCCTGCCAAGGATGATTCTCAAGATTCAGGGTGTGATTGTATACAACTGAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTTCTGTTTGTTTCTCTATTCAAAAGGATCATTTGCACTCTAGTCCTTTTGGCATCTTAATTCTGCTACTTTATCATACGACTACTCCGATATTTGCTATAGAATGTGCTCGTTTCATGAGCTTACATACTTGTATGAGGCGATATACGATCGGAGTTTTCCCACAGGATAGCTTATATGGTTCTAATGCAGCTCCTGAGCTCTCCCTTTGTGGCATTTGA 1410 50.0 MARPIWSASAKGRGRPFGQLARAEPGGLFSVPDVPNRPVSTWFVPKHLRVPKNPRMTNRHRRRCGLHHAGVQRFLLVLQVTSSPVSTNSLLVSREGQEQEEEEEKSIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATATGLWPSSVSGFGFQSSTAAAAAAAQSAANLANETSNYFHKLGFPPFDLPPSNMSPMSFTSILGGNTQQLPGLELGLSQQDGHIGVINPQALNQIYQQMGQARVHQHHHHHHHQQHQQPPAKDDSQDSGCDCIQLRAAWLELNFIFSVCFSIQKDHLHSSPFGILILLLYHTTTPIFAIECARFMSLHTCMRRYTIGVFPQDSLYGSNAAPELSLCGI 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1077250 1082131 - Maker00001620 Lcy10g0080 643591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0080 469 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 106 373 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy10g0080 469 MobiDBLite consensus disorder prediction 127 149 - -
Lcy10g0080 469 MobiDBLite consensus disorder prediction 95 110 - -
Lcy10g0080 469 MobiDBLite consensus disorder prediction 354 377 - -
Lcy10g0080 469 MobiDBLite consensus disorder prediction 91 110 - -
Lcy10g0080 469 Pfam TCP family transcription factor 139 289 IPR017887 -
Lcy10g0080 469 ProSiteProfiles TCP domain profile. 140 194 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0080 Lcy-Chr10:1077250 Lcy12g0508 Lcy-Chr12:6091919 1.12E-51 dispersed
Lcy8g2031 Lcy-Chr8:46561147 Lcy10g0080 Lcy-Chr10:1077250 4.89E-44 transposed
Lcy10g0080 Lcy-Chr10:1077250 Lcy3g1497 Lcy-Chr3:41843971 2.63E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18925 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0080 - - - 0.0