Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0080 ATGGCCCGACCCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCAGCTTGCGCGGGCCGAGCCCGGTGGCCTCTTTTCGGTCCCTGATGTCCCGAATCGCCCCGTTTCCACCTGGTTCGTCCCGAAACACCTCCGGGTTCCTAAAAACCCTAGGATGACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGAACAAGAAGAAGAAGAAGAAAAATCAATCATGGGTGAGAACAAACCAGCTGAAATCAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGAAAGAAACAGTTAGCTCCAAAGAGAAGCTCCAACAAAGATCGTCACACCAAAGTGGAAGGGCGAGGGCGAAGAATCCGTATGCCGGCTCTATGTGCGGCGAGGATTTTTCAATTGACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGCTGCTGCAGCAGGCGGAGCCGTCGATAATCGCCGCCACAGGCACTGGAACCATCCCGGCTTCGGCTCTAGCTGCGGCGGCGGGCTCTGTTTCGCAACAGGGTGCTTCTCTCTCGGCCGGATTGCACCAAAAATTGGAGGAATTGGGAGGTGGCGGGTCCAGTAGGGCCAATTGGGGCAATTTGGGGCGACCCCATTTGGCCGCCACAGCCACAGGGCTTTGGCCCTCATCTGTCAGTGGCTTTGGCTTTCAGTCCTCAACTGCTGCTGCTGCTGCTGCTGCTCAATCAGCTGCTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGCTTCCCACCCTTTGACTTACCCCCCTCCAACATGAGTCCTATGAGTTTCACCTCCATTTTAGGTGGAAACACTCAACAGTTACCTGGTTTAGAGCTTGGATTGTCCCAACAAGATGGCCATATTGGGGTTATAAATCCTCAAGCATTGAACCAGATTTACCAACAGATGGGACAGGCTAGAGTTCATCAGCATCATCATCATCATCATCATCAACAGCATCAGCAACCTCCTGCCAAGGATGATTCTCAAGATTCAGGGTGTGATTGTATACAACTGAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTTCTGTTTGTTTCTCTATTCAAAAGGATCATTTGCACTCTAGTCCTTTTGGCATCTTAATTCTGCTACTTTATCATACGACTACTCCGATATTTGCTATAGAATGTGCTCGTTTCATGAGCTTACATACTTGTATGAGGCGATATACGATCGGAGTTTTCCCACAGGATAGCTTATATGGTTCTAATGCAGCTCCTGAGCTCTCCCTTTGTGGCATTTGA 1410 50.0 MARPIWSASAKGRGRPFGQLARAEPGGLFSVPDVPNRPVSTWFVPKHLRVPKNPRMTNRHRRRCGLHHAGVQRFLLVLQVTSSPVSTNSLLVSREGQEQEEEEEKSIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATATGLWPSSVSGFGFQSSTAAAAAAAQSAANLANETSNYFHKLGFPPFDLPPSNMSPMSFTSILGGNTQQLPGLELGLSQQDGHIGVINPQALNQIYQQMGQARVHQHHHHHHHQQHQQPPAKDDSQDSGCDCIQLRAAWLELNFIFSVCFSIQKDHLHSSPFGILILLLYHTTTPIFAIECARFMSLHTCMRRYTIGVFPQDSLYGSNAAPELSLCGI 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1077250 1082131 - Maker00001620 Lcy10g0080 643591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0080 469 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 106 373 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy10g0080 469 MobiDBLite consensus disorder prediction 127 149 - -
Lcy10g0080 469 MobiDBLite consensus disorder prediction 95 110 - -
Lcy10g0080 469 MobiDBLite consensus disorder prediction 354 377 - -
Lcy10g0080 469 MobiDBLite consensus disorder prediction 91 110 - -
Lcy10g0080 469 Pfam TCP family transcription factor 139 289 IPR017887 -
Lcy10g0080 469 ProSiteProfiles TCP domain profile. 140 194 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0080 Lcy-Chr10:1077250 Lcy12g0508 Lcy-Chr12:6091919 1.12E-51 dispersed
Lcy8g2031 Lcy-Chr8:46561147 Lcy10g0080 Lcy-Chr10:1077250 4.89E-44 transposed
Lcy10g0080 Lcy-Chr10:1077250 Lcy3g1497 Lcy-Chr3:41843971 2.63E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18925 None None None None Lcy TF