Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0086 ATGGAGAATTATCAGATGTTTTTTCCTTGTTCCGGCGGCGGCGGATTGTCGGCGGCTTACCATCAGGCCGACATGTCGTCCGGCGGCGGGTCTGATATGTTCGGGAGTTTTCACGGCGGCGATCTGCAGGGAAGTGGGTTTTTGGGGCTGAAGACGGAGGAGGTGGATGCGGCGGCGGTGGAGGGCGGCGAACAGTACCAGATCGGCGGCGGCGGCGGGAAGAAGAAGGGGGAGAAGAAGGTGAGGAAACCGAGATATGCTTTTCAGACAAGGAGCCAAGTTGACATTCTTGACGATGGTTATCGTTGGAGGAAATATGGTCAAAAAGCTGTCAAAAACAACAAATTTCCTAGGAGCTATTATAGGTGCACACATCAAGGGTGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGCATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAAATTTACAGTACTCCTTTTTGA 534 50.0 MENYQMFFPCSGGGGLSAAYHQADMSSGGGSDMFGSFHGGDLQGSGFLGLKTEEVDAAAVEGGEQYQIGGGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1188721 1191332 + Maker00001637 Lcy10g0086 643597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0086 177 SUPERFAMILY WRKY DNA-binding domain 89 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g0086 177 ProSiteProfiles WRKY domain profile. 92 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g0086 177 Pfam WRKY DNA -binding domain 98 154 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g0086 177 SMART WRKY_cls 97 156 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g0086 177 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 74 157 IPR044810 GO:0003700(InterPro)
Lcy10g0086 177 FunFam WRKY transcription factor 57 83 157 - -
Lcy10g0086 177 Gene3D WRKY domain 74 157 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0086 Lcy-Chr10:1188721 Lcy10g2292 Lcy-Chr10:46551930 5.52E-58 dispersed
Lcy10g0086 Lcy-Chr10:1188721 Lcy11g1096 Lcy-Chr11:32924677 6.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18926 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0086 - - - 0.0