Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g0101 | ATGGGTCTCATCATCTCTCTCTTCTCTATCTCCATTTTCATTTTCCTCCTCTTCAGATTCCGGCCACCCTCCGGCAACTTTTCCGTCCAATCTTTGCCGCCGACGTACCCTCTCATCGGCTGCCTTCTCTCCTTCTACAAGAACCGCAACCGCCTCTTGGATTGGTACACAGAGCTCTTGTCGGAATCCGCCACTGGCACCATCGTCATCCGCCGCCTCGGCTGCCGGCGGACGGTGGTGACGGCGAACCCAGTTAACGTTGAGTATATTTTGACGACCCATTTCGTTAATTTCCCTAAAGGAAAGGCTTTCACTGAGATTTTGGGCGACTTTCTTGGCTGTGGAATTTTCAACGTCGACGGCGAGCTGTGGCGGACACAGCGGAAGCTGGCCAGCCATGAGTTCAGCGCTAAGTCGCTGCAGGAATTCGTCGTCAAGACGTTGGTGTCGGAGGTCGACAACCGGTTGTTGCCCGACATCGAGGCGTCGGCTCGAGATAATGCAGTCGTAGACTTGCAGGAGTTGCTAAGAGGATTTGCCTTCAGCATAATATGTAAAGTTGTATTAGGGAGTGAAGAAGAAACAATTTCTGCGCTCGAAAAGAGTTTTGATGTAGCGTCGGAAGTGAGCGCGGGACGAGCGACAGAGCCCGTTTACATGATATGGAAAATGAAGAGATGGTTTGGTGTCGGGTCGGAGCGGCGGCTGAAGATGGCGGTGGCGGAGGTTCACCGGAAGGTGATGAACATAATAGAGATGAGAAGGAAGAAGATGAAGATCCAAGATTTCCATGACAATGAAGATCTCTTGTCCAGATTGATCTCCGTTGGCCATGACGATGAGGTGGTACGAGACATGACCATAAGCTTCATCATGGCAGGTCGAGACACAACTTCAGCCGCCATGACATGGCTCTTTTGGCTACTCTCCCATCATCCCAACATCGAGAAGCAATTAGTAGAGGAGATAAACTCCGAATCAACCTCAACACTTCAAAAAAACGAATTCAACTACAAATCTCTCACGGAGCTCAAATTCCTCAATGCATGCCTATGCGAAACCATGAGAATCTACCCGCCCGTCCCTTGGGACTCCAAGCATGCCATTGCCGACGACTACTTGCCTGACGGGACTCAAGTCGAAGCCGGAGACCGAGTGACGTATTTCCCCTATGGGATGGGGAGAATGGAGGCTCTATGGGGGAAGGACCGATTTGAGTTCAAGCCGAGCCGATGGCTATCGGAGCCGGACGGCCGTGCTCGTAGGAGAGGGGTGAAATTGGTGAGTCCATACAAGTTTCCAATATTTCAGGCGGGGCCTAGGGTGTGTTTAGGAAAAGAGATGGCTTTCATTCAAATGAAGTATGTGGTGGCTTCAATTCTCAGCCAATTCAGAATCAAACCCATTGCCACCGACCACCCTGTGTTTGTGCCGCTGTTGACGGCGCACATGGCTGGCGGCTTCAAAGTTTTGTTTCAAAAGAGAGACATAATTTCCAACACTGAACTGACAGACAACAGTGTTGAGAAACATCCATCCAATGTGTCAACAGCTGATTGCTTGCAAGGCACGGTGCAATAA | 1581 | 50.54 | MGLIISLFSISIFIFLLFRFRPPSGNFSVQSLPPTYPLIGCLLSFYKNRNRLLDWYTELLSESATGTIVIRRLGCRRTVVTANPVNVEYILTTHFVNFPKGKAFTEILGDFLGCGIFNVDGELWRTQRKLASHEFSAKSLQEFVVKTLVSEVDNRLLPDIEASARDNAVVDLQELLRGFAFSIICKVVLGSEEETISALEKSFDVASEVSAGRATEPVYMIWKMKRWFGVGSERRLKMAVAEVHRKVMNIIEMRRKKMKIQDFHDNEDLLSRLISVGHDDEVVRDMTISFIMAGRDTTSAAMTWLFWLLSHHPNIEKQLVEEINSESTSTLQKNEFNYKSLTELKFLNACLCETMRIYPPVPWDSKHAIADDYLPDGTQVEAGDRVTYFPYGMGRMEALWGKDRFEFKPSRWLSEPDGRARRRGVKLVSPYKFPIFQAGPRVCLGKEMAFIQMKYVVASILSQFRIKPIATDHPVFVPLLTAHMAGGFKVLFQKRDIISNTELTDNSVEKHPSNVSTADCLQGTVQ | 526 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1316657 | 1320975 | + | Maker00001806 | Lcy10g0101 | 643612 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g0101 | 526 | SUPERFAMILY | Cytochrome P450 | 33 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | CDD | CYP86A | 67 | 488 | - | - | |
| Lcy10g0101 | 526 | PANTHER | CYTOCHROME P450 | 17 | 488 | - | - | |
| Lcy10g0101 | 526 | Pfam | Cytochrome P450 | 33 | 473 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | E-class P450 group I signature | 348 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | E-class P450 group I signature | 443 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | E-class P450 group I signature | 433 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | E-class P450 group I signature | 282 | 299 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | E-class P450 group I signature | 302 | 328 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | Gene3D | Cytochrome P450 | 29 | 496 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | P450 superfamily signature | 443 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | P450 superfamily signature | 293 | 310 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g0101 | 526 | PRINTS | P450 superfamily signature | 434 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g0101 | Lcy-Chr10:1316657 | Lcy5g0814 | Lcy-Chr5:12666315 | 3.52E-124 | dispersed | |
| Lcy10g0101 | Lcy-Chr10:1316657 | Lcy2g0066 | Lcy-Chr2:478628 | 9.66E-207 | wgd | |
| Lcy10g0101 | Lcy-Chr10:1316657 | Lcy9g0964 | Lcy-Chr9:32320550 | 4.10E-11 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g0101 | K20665 | - | csv:101207598 | 788.489 |