Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0123 ATGCCAAGCGTGGCTGTCAAGCTCTACAGCGTGTTCTTCAAGTTTCTCTTGAAGCATCGTCTGCAGAATCTGATCCAAGCTCCACTTGACGAATCCAGCCCTTTTGGAGTCACATCTCGACCCGAGGAAACCGTTGCTTCCGCTAATCCTTTGTTCACCGACGGCGTTGCTACCAAAGATATCCACATCGATCCGTTTACATCTCTTAGCATTCGGATCTTCCTCCCTGAATCCGCTCTTACTCCGCCTGAACCCGATTCCAAACCCTCTTCCAAATCGTCCAAGCCTAAACCTAAACGGTCCAATCAAGATGCTCAGCCCGATCTTGTTAACCAGAATCTGAATAATGTACAGCAATATCCTTCGCGGCGAAATAGCTATGGCCCTTCGGGAAATTCTAGAGAAGAACTGCGGATGAATAGAGTTGGGAGTTACAGTAATGAAATGGAGGGGTTGAATTTGATTCCGGGCCCTGCCACCGGTGGCGTTTACAGGGGGTATGCGCCAGCCACGGAGAATAGTCGGAGGTTGCCGATAATGTTGCAATTTCACGGCGGGGGGTGGGTCAGTGGGAGCAATGATTCGGCGGCGAATGATTTCTTTTGCCGGAGGATTGCAAAATTGTGTGATGTTATCGTCGTTGCTGTTGGGTATCGGCTTGCGCCGGAGAATCGGTTTCCGGCTGCGTTTGAAGATGGGTTGAAGGTGTTGAATTGGCTGGGGAAGCAGGCTAATTTGGCCGAGTGCAGCAAGTCTATGGGAAATACCAAAGGGAATAGCAATGAGTTTAAGAAATCAGATAATCATAGGCATATTGTTGACACATTTGGGGCGTCAATGGTAGAGCCTTGGTTGGCAGCCCACGGAGATCCAACAAGATGTGTTCTTCTTGGGGTTAGCTGTGGAGCAAATATTGCAGATTATGTGGCTCGAAAGGCAGTCGAGGCCGGTAAGCTCTTGGACCCTGTCAAGGTAGTTGCGCAGGTTCTCCTGTACCCATTCTTCGTCGGGAGTGTCCCCACACATTCGGAATTGAAGTTGGCGAATTCGTATTTTTACGACAAAGCTATGTGCCTTCTCGCTTGGAAACTATTCCTACCCGAGGAAGAGTTTAGTCTTGATCATCTAGCTGCAAACCCCCTTGTTTCTGGTAGAGAAGGTCCACCTTTAAAGCTCATGCCACCAACACTGACAGTGGTGGCTGAACTCGACTGGATGAGAGATCGAGCCATAGCTTACTCTGAAGAACTTCGAAAGGTGAATGTCGATGCACCTGTTCTCGACTACAAGGATTCAGTACACGAATTTGCGACCCTCGACATTCTTCTCAAGACACCTCAAGCCCAAGCTTGTGCAGAGGACATTGCCATCTGGGTCAAAAAATATATTTCACTACGAGGCCATGAGTTCTCTTATTGA 1419 48.7 MPSVAVKLYSVFFKFLLKHRLQNLIQAPLDESSPFGVTSRPEETVASANPLFTDGVATKDIHIDPFTSLSIRIFLPESALTPPEPDSKPSSKSSKPKPKRSNQDAQPDLVNQNLNNVQQYPSRRNSYGPSGNSREELRMNRVGSYSNEMEGLNLIPGPATGGVYRGYAPATENSRRLPIMLQFHGGGWVSGSNDSAANDFFCRRIAKLCDVIVVAVGYRLAPENRFPAAFEDGLKVLNWLGKQANLAECSKSMGNTKGNSNEFKKSDNHRHIVDTFGASMVEPWLAAHGDPTRCVLLGVSCGANIADYVARKAVEAGKLLDPVKVVAQVLLYPFFVGSVPTHSELKLANSYFYDKAMCLLAWKLFLPEEEFSLDHLAANPLVSGREGPPLKLMPPTLTVVAELDWMRDRAIAYSEELRKVNVDAPVLDYKDSVHEFATLDILLKTPQAQACAEDIAIWVKKYISLRGHEFSY 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1619907 1623836 + Maker00002015 Lcy10g0123 643634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0123 472 SUPERFAMILY alpha/beta-Hydrolases 164 463 IPR029058 -
Lcy10g0123 472 PANTHER ARYLACETAMIDE DEACETYLASE 47 441 IPR050466 -
Lcy10g0123 472 MobiDBLite consensus disorder prediction 78 137 - -
Lcy10g0123 472 Pfam alpha/beta hydrolase fold 180 437 IPR013094 GO:0016787(InterPro)
Lcy10g0123 472 MobiDBLite consensus disorder prediction 104 137 - -
Lcy10g0123 472 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 180 196 IPR002168 GO:0016787(InterPro)
Lcy10g0123 472 Gene3D alpha/beta hydrolase 32 466 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0123 Lcy-Chr10:1619907 Lcy10g0255 Lcy-Chr10:4156670 2.52E-45 dispersed
Lcy10g0123 Lcy-Chr10:1619907 Lcy13g0609 Lcy-Chr13:7978768 2.62E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0123 - - - 0.0