Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0161 ATGGGTTCTGGTAATGGGTTTTATTCAACTAGTGAGTTCAATTTGGATGCTAAATGGTTAATTGATCCTAAGCATCTTTTTGTTGGGCCGAAGATTGGAGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAGTACAAAAATCAGATTGTGGCTATCAAAATGGTCGGTAAAGGAGATACCCCTGAGAGGATGGCCAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAATTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTGACTGAATTACTCACAGGTGGTACATTGCGCAAATACCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTAGCGATCGGGTTTGCGCTTGATATTGCTCGTGCAATGGAGTGTTTACACTCCCATGGAATCATTCACCGTGACCTTAAACCAGAGAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGAGATAAAAAGCATTACAATCATAAGGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGTTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCTAGTGCTGAAAATCTTCCAGAGGACTTAGCTTTGATAGTGACATCATGTTGGAGAGAGGATCCAAACACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTACAGTCCCTCGCTAGAATATCACCACGAGCACCCGTGATCCCACCTCGGATATGTGCTTCTGAAAATGTCGTGATACCACCTGAATCTCCTGGTACAAATTCCTTGATGGCTGTCAGGCATGGCTCGGGGGAAGCCTCACATGGCATGATCGAAGAAACTCCAAAAAGCTCCTTTTTTTGCTTTAACAAGTGTTACTGA 1059 43.53 MGSGNGFYSTSEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLARISPRAPVIPPRICASENVVIPPESPGTNSLMAVRHGSGEASHGMIEETPKSSFFCFNKCY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2211542 2216453 - Maker00001548 Lcy10g0161 643672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0161 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Lcy10g0161 352 CDD STKc_MAP3K-like 32 286 - -
Lcy10g0161 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Lcy10g0161 352 SUPERFAMILY Protein kinase-like (PK-like) 17 308 IPR011009 -
Lcy10g0161 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524(InterPro)
Lcy10g0161 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0161 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0161 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0161 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0161 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0161 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0161 352 Gene3D Transferase(Phosphotransferase) domain 1 106 296 - -
Lcy10g0161 352 SMART serkin_6 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0161 352 PANTHER SERINE-THREONINE PROTEIN KINASE 20 290 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy10g0161 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0161 Lcy-Chr10:2211542 Lcy5g0042 Lcy-Chr5:567813 6.62E-143 dispersed
Lcy10g0161 Lcy-Chr10:2211542 Lcy10g1896 Lcy-Chr10:43096822 1.47E-135 wgd
Lcy10g0161 Lcy-Chr10:2211542 Lcy2g0117 Lcy-Chr2:885342 4.76E-204 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65364 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0161 - - - 0.0