Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0165 ATGGAGCCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGACATCTACATCGAGGATTCTCGATTCATCTTGCCACCCTTCTCCTAAACAATCGAGGGATGAAGCAACTTCTTCGACATCCTACACTACGTCTCAAAATTGTGCCAAGAAACCTGTTCGTCATCCAAATGGTTCTTCTGTAAGTAATAAAAAACATCCTACCAATGTGAACCATGGCGTGCAGCTTGAAGGTTTAACTGATGTGATAAAGCATACACACGTTTCCAATAAGGGGAAATCCGAGTTTGTAAACCCGACGGATATTTCATATAAATCGACTGAAAATTCTTTTCAGAAGAAGGTTCCCTTGGAGGGAGGTGGAGCAAAACCCCTTGTGAAGCATATTATCGACTATTCTAAGGATTGTTGTTCAAGTGGCTCGGAAGAATCTGGAAATCAAGTATTCAACGCATCGAAAGGAGCTGGCACACAAATAAATCATCAAAAAAAGTCACAGCCATCTGAAATATCTTGCCCAAGTCCTCAGAATAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAATACAGAAGTCAGTGAATGTGCAAGCAGCATTGAAAAGTCTTGTGAAAGCGTCGACGTCACAAATTCCTATGATCTTGACAAGAGCAGGAAAACGAGTGTTTACCGAGGCAGCACTGGCAGTGATATCAGTGATGAGAGCAACTCAAGTAGTTTAAGCAATGCCATGTACAAACCCCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGCTAGGTCTGAATCATTTCAGGTTGCTGCGGAGACTGGGGTGTGGCGATATCGGTAGTGTATATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCATTCCTGCCAACTTTGTATACACATTTTGAGACAGAGAAGTTCTCTTGTTTGGTAATGGAGTTCTGCCCCGGAGGCGACTTGCATGCGCTCAGGCAGAGACAACCCGGAAAATTTTTTCCAGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTTTTAGTGAGAGACGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGTGCCGTCTCCCCGACCCTTGTAAAATCATCGAACTCGGGTTTAGAATCTAAAAGCTCTGGGTACTGTGTTCAGCCTGCTTGCATCGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACGCCCCGCTTCCTAAGCAGACACAGGAAAGAAAAGAAATCCAAACCAAAGAGTGAAGTGTATCATCAAGTGAGCCCTCTACCAGAGCTCATTGCCGAGCCCACGAGTGCGAGATCGATGTCCTTCGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAAGGTGAAGGCCATGGCAGTGCTGTGGATTGGTGGACGTTCGGGATCTTTCTCTACGAGCTTTTGTTTGGTAGAACTCCATTCAAGGGGGCTGGGAACCGGGCTACTTTGTTTAATGTGGTTGGCCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCAGAGGTTTGCTTGTAAAAGAACCACAACATCGTCTCGCTTATAGGCGTGGCGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGCGCCAATCCTCCAGAGGTGCCAAGAGTAGATGCCATTGATTTCTCTTCAAGAATGGAGACACCACACGCACCGGCAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2022 45.15 MEPLVDGMSSLLKTQNPTSTSRILDSSCHPSPKQSRDEATSSTSYTTSQNCAKKPVRHPNGSSVSNKKHPTNVNHGVQLEGLTDVIKHTHVSNKGKSEFVNPTDISYKSTENSFQKKVPLEGGGAKPLVKHIIDYSKDCCSSGSEESGNQVFNASKGAGTQINHQKKSQPSEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESVDVTNSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLESKSSGYCVQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDAIDFSSRMETPHAPAGEKMPGVDVKPSGNYLEIDFF 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2253453 2257683 - Maker00001920 Lcy10g0165 643676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0165 673 FunFam Serine/threonine-protein kinase D6PK-like 279 364 - -
Lcy10g0165 673 Gene3D Phosphorylase Kinase; domain 1 273 366 - -
Lcy10g0165 673 MobiDBLite consensus disorder prediction 229 252 - -
Lcy10g0165 673 MobiDBLite consensus disorder prediction 1 74 - -
Lcy10g0165 673 ProSiteProfiles Protein kinase domain profile. 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0165 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0165 673 Pfam Protein kinase domain 282 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0165 673 Pfam Protein kinase domain 514 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0165 673 FunFam serine/threonine-protein kinase D6PK-like 512 635 - -
Lcy10g0165 673 PANTHER FLIPPASE KINASE 1-RELATED 146 637 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy10g0165 673 CDD STKc_phototropin_like 280 640 - -
Lcy10g0165 673 Gene3D Transferase(Phosphotransferase) domain 1 367 634 - -
Lcy10g0165 673 SMART serkin_6 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0165 673 MobiDBLite consensus disorder prediction 158 178 - -
Lcy10g0165 673 FunFam serine/threonine-protein kinase D6PK-like 365 432 - -
Lcy10g0165 673 MobiDBLite consensus disorder prediction 9 74 - -
Lcy10g0165 673 SUPERFAMILY Protein kinase-like (PK-like) 256 639 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0165 Lcy-Chr10:2253453 Lcy1g0511 Lcy-Chr1:4446560 2.80E-220 dispersed
Lcy10g0165 Lcy-Chr10:2253453 Lcy5g1341 Lcy-Chr5:31986784 2.85E-241 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65365 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0165 K08286 - csv:101219962 1251.88