Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0180 | ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCGATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGGTCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAGTGCACATCTTGGCTCGCCGATGATTCGGGGAGTAGTGAGAGGACATACCGTTGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGCGGCGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCCCCCTGTTCCGAGGGTCTCGTGGAGTTTCATGGAGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCTTTGGAGTACATGGATGGAGGATCATTGGCCGATGTCCTGCGTTTGAAGAAATGTATACCTGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTGCTTGTAAATCTCAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTTGGAACTGTCACATACATGTCACCGGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATACTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCATCGCCATCACCGTCAAAACAGAAGTTTTCACCGGAGTTTTGCTCGTTTGTTGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACCTGGCAGCATTTGTCCAAAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTATTCCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATTCGAAGTACATTAGCGGGAGACTGGCCTCTTGAAAAATTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCAAGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCATCGGGAACCAGTTCCTTATATGTGGAGACGGTGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTGCCATTGATGTGGCAAGTAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATAGAACCGAGCAACCTCATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG | 1557 | 43.74 | MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALFHESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLAIDVASKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ | 518 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2476269 | 2482651 | - | Maker00001692 | Lcy10g0180 | 643691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0180 | 518 | FunFam | mitogen-activated protein kinase kinase 3 | 165 | 361 | - | - | |
Lcy10g0180 | 518 | SUPERFAMILY | NTF2-like | 364 | 516 | IPR032710 | - | |
Lcy10g0180 | 518 | ProSiteProfiles | Protein kinase domain profile. | 83 | 339 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy10g0180 | 518 | FunFam | mitogen-activated protein kinase kinase 3 | 56 | 164 | - | - | |
Lcy10g0180 | 518 | Pfam | Protein kinase domain | 87 | 339 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy10g0180 | 518 | FunFam | Mitogen-activated protein kinase kinase 3 | 363 | 517 | - | - | |
Lcy10g0180 | 518 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 366 | 516 | IPR018222 | - | |
Lcy10g0180 | 518 | CDD | PKc_MAPKK_plant_like | 84 | 343 | - | - | |
Lcy10g0180 | 518 | Gene3D | Phosphorylase Kinase; domain 1 | 77 | 158 | - | - | |
Lcy10g0180 | 518 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 367 | IPR011009 | - | |
Lcy10g0180 | 518 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 203 | 215 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g0180 | 518 | ProSitePatterns | Protein kinases ATP-binding region signature. | 89 | 112 | IPR017441 | GO:0005524(InterPro) | |
Lcy10g0180 | 518 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 63 | 372 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Lcy10g0180 | 518 | Gene3D | - | 363 | 517 | - | - | |
Lcy10g0180 | 518 | SMART | serkin_6 | 83 | 339 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy10g0180 | 518 | Gene3D | Transferase(Phosphotransferase) domain 1 | 159 | 362 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0180 | Lcy-Chr10:2476269 | Lcy4g2203 | Lcy-Chr4:48603129 | 1.92E-75 | dispersed | |
Lcy13g0089 | Lcy-Chr13:899414 | Lcy10g0180 | Lcy-Chr10:2476269 | 6.65E-42 | transposed | |
Lcy10g0180 | Lcy-Chr10:2476269 | Lcy9g0888 | Lcy-Chr9:29709833 | 1.53E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65366 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0180 | K20607 | - | csv:101217978 | 1005.36 |