Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0180 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCGATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGGTCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAGTGCACATCTTGGCTCGCCGATGATTCGGGGAGTAGTGAGAGGACATACCGTTGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGCGGCGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCCCCCTGTTCCGAGGGTCTCGTGGAGTTTCATGGAGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCTTTGGAGTACATGGATGGAGGATCATTGGCCGATGTCCTGCGTTTGAAGAAATGTATACCTGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTGCTTGTAAATCTCAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTTGGAACTGTCACATACATGTCACCGGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATACTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCATCGCCATCACCGTCAAAACAGAAGTTTTCACCGGAGTTTTGCTCGTTTGTTGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACCTGGCAGCATTTGTCCAAAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTATTCCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATTCGAAGTACATTAGCGGGAGACTGGCCTCTTGAAAAATTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCAAGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCATCGGGAACCAGTTCCTTATATGTGGAGACGGTGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTGCCATTGATGTGGCAAGTAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATAGAACCGAGCAACCTCATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1557 43.74 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALFHESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLAIDVASKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2476269 2482651 - Maker00001692 Lcy10g0180 643691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0180 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Lcy10g0180 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Lcy10g0180 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0180 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Lcy10g0180 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0180 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Lcy10g0180 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Lcy10g0180 518 CDD PKc_MAPKK_plant_like 84 343 - -
Lcy10g0180 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
Lcy10g0180 518 SUPERFAMILY Protein kinase-like (PK-like) 85 367 IPR011009 -
Lcy10g0180 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0180 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Lcy10g0180 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 63 372 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy10g0180 518 Gene3D - 363 517 - -
Lcy10g0180 518 SMART serkin_6 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0180 518 Gene3D Transferase(Phosphotransferase) domain 1 159 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0180 K20607 - - csv:101217978 1005.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0180 Lcy-Chr10:2476269 Lcy4g2203 Lcy-Chr4:48603129 1.92E-75 dispersed
Lcy13g0089 Lcy-Chr13:899414 Lcy10g0180 Lcy-Chr10:2476269 6.65E-42 transposed
Lcy10g0180 Lcy-Chr10:2476269 Lcy9g0888 Lcy-Chr9:29709833 1.53E-29 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0940 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.2 6.7e-136 481.1
Lcy4g2246 . 42 339 MAP Kinase Kinase Gene Family AT4G26070 65.9 5.7e-111 398.3
Lcy4g2203 . 26 355 MAP Kinase Kinase Gene Family AT4G26070 55.6 1.5e-106 383.6
Lcy2g0940 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.6e-134 476.5
Lcy4g2246 . 16 339 MAP Kinase Kinase Gene Family AT4G29810 61.5 9.7e-111 397.5
Lcy4g2203 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 59.5 2.8e-110 396.0
Lcy10g0180 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT1G51660 68.5 8.8e-126 447.6
Lcy5g2364 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.9 1.9e-83 307.0
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT3G21220 67.4 7.6e-127 451.1
Lcy5g2364 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 7.2e-85 311.6
Lcy4g2203 . 1 359 MAP Kinase Kinase Gene Family AT5G56580 83.3 3.3e-170 595.1
Lcy2g0940 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 60.2 2.4e-120 429.5
Lcy4g2246 . 16 323 MAP Kinase Kinase Gene Family AT5G56580 56.5 1.9e-96 350.1
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.7 2.0e-107 386.3
Lcy13g0089 . 78 341 MAP Kinase Kinase Gene Family AT1G18350 52.8 8.3e-77 284.6
Lcy5g2364 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 1.7e-79 293.5
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.0e-114 410.6
Lcy13g0089 . 82 341 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65366 None None None None Lcy PK