Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g0181 | ATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGACGAAAATGCCTACCGGACTGCGTTTTCGCGCCGTATTTCCCGCCGGAGGAGCCGCAAAAGTTCGCCAACGTCCACAAGATCTTCGGCGCCAGCAATGTCAGCAAATTGCTGAATGAAGTTCAGCCACACCAGCGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCGGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGTGCCATTTCCATCCTCCAAAGGCAAGTCATCAAGCTTCAAAAAGAACTGGATGCCACTAACGCGGATCTCATTCGCTATGCTTGTAGCGAAATCCCCGCCCCGTCCCCGTCCTCGTCGTCGCAGTACGCTCGAAGGTCGTCCTCGACGAGCCATGAAGGAAGCTCATCCACCACTAGCTATAGCCACTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAACAATGGCCCTTGTGGAGATGGCCATGATCACAAAGGAGAATACAAGTAA | 537 | 54.0 | MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSTTSYSHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK | 178 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2497599 | 2498135 | + | Maker00001674 | Lcy10g0181 | 643692 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g0181 | 178 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| Lcy10g0181 | 178 | Coils | Coil | 89 | 109 | - | - | |
| Lcy10g0181 | 178 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
| Lcy10g0181 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 130 | - | - | |
| Lcy10g0181 | 178 | MobiDBLite | consensus disorder prediction | 120 | 146 | - | - | |
| Lcy10g0181 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g0181 | Lcy-Chr10:2497599 | Lcy4g1549 | Lcy-Chr4:39163632 | 3.26E-57 | dispersed | |
| Lcy10g2185 | Lcy-Chr10:45770518 | Lcy10g0181 | Lcy-Chr10:2497599 | 9.72E-48 | transposed | |
| Lcy10g0181 | Lcy-Chr10:2497599 | Lcy10g1903 | Lcy-Chr10:43176159 | 1.67E-75 | wgd | |
| Lcy10g0181 | Lcy-Chr10:2497599 | Lcy11g0522 | Lcy-Chr11:12170869 | 1.95E-34 | wgd | |
| Lcy10g0181 | Lcy-Chr10:2497599 | Lcy2g0127 | Lcy-Chr2:981291 | 3.05E-72 | wgd | |
| Lcy10g0181 | Lcy-Chr10:2497599 | Lcy5g2196 | Lcy-Chr5:45039484 | 3.58E-63 | wgd | |
| Lcy10g0181 | Lcy-Chr10:2497599 | Lcy8g0393 | Lcy-Chr8:12067168 | 1.68E-45 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18929 | None | None | None | None | Lcy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g0181 | - | - | - | 0.0 |