Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0212 ATGACCTACATTTCCACAAATTTGGCACACATGTCTGTTGTTTTGTTGCTTTCCTCTGCCTCTTCCTCGACCACTTCTATAGTTCCCTTGATTGTAGCTTCGATTGGATTGATATTGTTGGGAATTCTGCTTTGTGGCGTCAGTACTCACATAGTTAAGCGAGGCTTGATTAAGAGAGACAGTACCTTTGAGAGCTTGGAGACGTTCTTGTCTTTGCTCATAAGACAGAAGCTCAAATTGGATTTGGCTCCAGGTCATGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCATTGAGATCAAAGACTTTGGTGATACACAGATGATGCTGAAAGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCAATTCAACAGCTTCTGCTTTCAAACGATCTAGATATTTTATTTAACAGAGGTCGAGTACCTATTGCTACTTGGAAGAAGGAAATTTTGGCATCGAATTTGCAAACACCTGATGCAAGCAGTGGGAATTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCAACATCGCAAGGTTGGAAACATCTTAGCGATCAAAATGGAGATGTAAAATCACATATGCAGAGAAACATTCTCACTCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATTTATGTGGGGTCATGTATACAGACTGAAGGGGAAGTAGAGGCTTTGTCAAATAACGTGGATGATTTTCCAGCATTGTTATCTAGAAATTGGAGAAAAGGTTTATGTACTGTCTATCTGGGTTTCGGGAAAAGGTTGAAGCTGACATGCTTTTCCTTGATGTCCATCTGCAGTGCACAGTTCTTAGTCCATCTTCGTTACATTTCTTTTGAACTTTTGCTACAGGGGATTACTGCTGTATTGAATTTTCAAAGTTCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCATGCCAAAAATATGATATTCTCATGATCAACTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAGAAACTTCCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAGAAGAACCATCGAGTTTTTGTATCTTGTACCACTGGTTTTGATCGATCCCCAGCAAGTGTGATTGCATATTTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCATATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTCGGAGATTTTACTGGTAACTGGAAAGAACCAGTCAAGGCCAGTCACAAAGGTGGCCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTACAAGTACATCACAAATGGTCAATGGAGGCACTCAACAACTTCACCTGCTGAAAGAGACGATAGGGGAAATCTCAACAATGTAATAGTCATTGGCGATACTGCCAGTGTTAGGCCTTCTTCGGTTCAACCGCTAAAAAAGGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGATTAACTCCCAAGTAG 1887 41.6 MTYISTNLAHMSVVLLLSSASSSTTSIVPLIVASIGLILLGILLCGVSTHIVKRGLIKRDSTFESLETFLSLLIRQKLKLDLAPGHGNAEKSRIIMVGDTLKKASDSSGVKLIEIKDFGDTQMMLKEKAGSFSLVLERPFTPFPIQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTPDASSGNSGFATFSSKFSTSQGWKHLSDQNGDVKSHMQRNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEGEVEALSNNVDDFPALLSRNWRKGLCTVYLGFGKRLKLTCFSLMSICSAQFLVHLRYISFELLLQGITAVLNFQSSTEAENWGINSKLINESCQKYDILMINYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFVSCTTGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFIWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTTSPAERDDRGNLNNVIVIGDTASVRPSSVQPLKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3249875 3257595 + Maker00001609 Lcy10g0212 643723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0212 628 Pfam Glycogen recognition site of AMP-activated protein kinase 494 575 IPR032640 -
Lcy10g0212 628 SUPERFAMILY E set domains 491 574 IPR014756 -
Lcy10g0212 628 CDD DSP_laforin-like 271 472 IPR045204 GO:0019203(InterPro)
Lcy10g0212 628 Gene3D Immunoglobulins 481 577 IPR013783 -
Lcy10g0212 628 Gene3D Protein tyrosine phosphatase superfamily 354 591 IPR029021 -
Lcy10g0212 628 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 354 465 IPR029021 -
Lcy10g0212 628 CDD E_set_AMPKbeta_like_N 494 573 - -
Lcy10g0212 628 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 86 622 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Lcy10g0212 628 Pfam Dual specificity phosphatase, catalytic domain 355 459 IPR000340 GO:0016311(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0212 - - - 0.0