Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0212 ATGACCTACATTTCCACAAATTTGGCACACATGTCTGTTGTTTTGTTGCTTTCCTCTGCCTCTTCCTCGACCACTTCTATAGTTCCCTTGATTGTAGCTTCGATTGGATTGATATTGTTGGGAATTCTGCTTTGTGGCGTCAGTACTCACATAGTTAAGCGAGGCTTGATTAAGAGAGACAGTACCTTTGAGAGCTTGGAGACGTTCTTGTCTTTGCTCATAAGACAGAAGCTCAAATTGGATTTGGCTCCAGGTCATGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCATTGAGATCAAAGACTTTGGTGATACACAGATGATGCTGAAAGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCAATTCAACAGCTTCTGCTTTCAAACGATCTAGATATTTTATTTAACAGAGGTCGAGTACCTATTGCTACTTGGAAGAAGGAAATTTTGGCATCGAATTTGCAAACACCTGATGCAAGCAGTGGGAATTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCAACATCGCAAGGTTGGAAACATCTTAGCGATCAAAATGGAGATGTAAAATCACATATGCAGAGAAACATTCTCACTCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATTTATGTGGGGTCATGTATACAGACTGAAGGGGAAGTAGAGGCTTTGTCAAATAACGTGGATGATTTTCCAGCATTGTTATCTAGAAATTGGAGAAAAGGTTTATGTACTGTCTATCTGGGTTTCGGGAAAAGGTTGAAGCTGACATGCTTTTCCTTGATGTCCATCTGCAGTGCACAGTTCTTAGTCCATCTTCGTTACATTTCTTTTGAACTTTTGCTACAGGGGATTACTGCTGTATTGAATTTTCAAAGTTCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCATGCCAAAAATATGATATTCTCATGATCAACTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAGAAACTTCCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAGAAGAACCATCGAGTTTTTGTATCTTGTACCACTGGTTTTGATCGATCCCCAGCAAGTGTGATTGCATATTTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCATATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTCGGAGATTTTACTGGTAACTGGAAAGAACCAGTCAAGGCCAGTCACAAAGGTGGCCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTACAAGTACATCACAAATGGTCAATGGAGGCACTCAACAACTTCACCTGCTGAAAGAGACGATAGGGGAAATCTCAACAATGTAATAGTCATTGGCGATACTGCCAGTGTTAGGCCTTCTTCGGTTCAACCGCTAAAAAAGGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGATTAACTCCCAAGTAG 1887 41.6 MTYISTNLAHMSVVLLLSSASSSTTSIVPLIVASIGLILLGILLCGVSTHIVKRGLIKRDSTFESLETFLSLLIRQKLKLDLAPGHGNAEKSRIIMVGDTLKKASDSSGVKLIEIKDFGDTQMMLKEKAGSFSLVLERPFTPFPIQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTPDASSGNSGFATFSSKFSTSQGWKHLSDQNGDVKSHMQRNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEGEVEALSNNVDDFPALLSRNWRKGLCTVYLGFGKRLKLTCFSLMSICSAQFLVHLRYISFELLLQGITAVLNFQSSTEAENWGINSKLINESCQKYDILMINYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFVSCTTGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFIWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTTSPAERDDRGNLNNVIVIGDTASVRPSSVQPLKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3249875 3257595 + Maker00001609 Lcy10g0212 643723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0212 628 Pfam Glycogen recognition site of AMP-activated protein kinase 494 575 IPR032640 -
Lcy10g0212 628 SUPERFAMILY E set domains 491 574 IPR014756 -
Lcy10g0212 628 CDD DSP_laforin-like 271 472 IPR045204 GO:0019203(InterPro)
Lcy10g0212 628 Gene3D Immunoglobulins 481 577 IPR013783 -
Lcy10g0212 628 Gene3D Protein tyrosine phosphatase superfamily 354 591 IPR029021 -
Lcy10g0212 628 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 354 465 IPR029021 -
Lcy10g0212 628 CDD E_set_AMPKbeta_like_N 494 573 - -
Lcy10g0212 628 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 86 622 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Lcy10g0212 628 Pfam Dual specificity phosphatase, catalytic domain 355 459 IPR000340 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0212 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy9g0745 . 3 101 Protein tyrosine phosphatase (PTP) family AT1G71860 74.7 2.1e-41 167.2
Lcy2g0017 . 132 859 Protein tyrosine phosphatase (PTP) family AT5G23720 63.0 5.3e-244 841.6
Lcy2g0016 . 370 542 Protein tyrosine phosphatase (PTP) family AT5G23720 72.6 4.4e-65 247.3
Lcy13g0243 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 8.6e-44 174.1
Lcy3g0013 . 87 226 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.4e-41 166.0
Lcy3g0025 . 378 513 Protein tyrosine phosphatase (PTP) family AT3G06110 58.8 1.5e-40 163.3
Lcy4g0737 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 4.7e-72 268.1
Lcy7g1054 . 34 273 Protein tyrosine phosphatase (PTP) family AT3G10940 68.1 1.9e-99 359.8
Lcy10g0212 . 124 628 Protein tyrosine phosphatase (PTP) family AT3G01510 64.8 3.8e-195 678.3
Lcy4g0731 . 33 242 Protein tyrosine phosphatase (PTP) family AT2G32960 63.1 4.7e-73 271.9
Lcy4g2209 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.2e-79 294.3
Lcy4g2209 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.0e-45 180.6
Lcy4g0731 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.7e-70 263.1
Lcy2g1461 . 8 228 Protein tyrosine phosphatase (PTP) family AT3G02800 60.2 3.3e-74 275.4
Lcy4g0731 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 6.8e-51 198.0
Lcy7g0844 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.3e-62 238.8
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy4g0225 . 104 685 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 1.8e-216 749.6
Lcy1g0966 . 31 634 Protein tyrosine phosphatase (PTP) family AT3G19420 60.1 2.9e-198 689.1
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy8g1980 . 64 269 Protein tyrosine phosphatase (PTP) family AT3G44620 59.0 3.9e-67 252.3
Lcy6g2209 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 2.3e-111 399.4
Lcy1g1532 . 1 402 Protein tyrosine phosphatase (PTP) family AT3G09100 57.4 1.9e-121 434.1
Lcy1g1532 . 5 402 Protein tyrosine phosphatase (PTP) family AT5G01290 53.9 3.8e-111 399.8
Lcy1g1532 . 86 294 Protein tyrosine phosphatase (PTP) family AT5G28210 64.9 4.3e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35