Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0222 | ATGAAAGAGAAGAGTGAAAGTGGAGGTGGGTATGTGAGGGCAGATCAGATAGATCTGAAGAGCTTGGACGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGAAAGGAAGACGAGGAAGGCGGCGGTGGTGGTGGTGCCGGAGGCGGCTGCGGAAGGCCGGCGATCACCAGGCAGGACTGGGAGATTGACCCTTCTAAACTCATCATCAAAAGCGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGCCAAGATGTTGCTGTTAAACTTCTTGACTGGGGAGAAGAGGGTCATAGGTCGGAGGCAGAAATCGCTTCTCTTAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCTACAATAGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCAAGCAATATTTGTTGTGTCGTCGTTGAATATTGTCCTGGTGGTGCTCTGAAATCTTACCTCATAAAGAACCGGAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACAAGAACGGTAAAAATTGCAGACTTTGGTGTTGCTCGTGTTGAGGCCTCAAATCCCAACGATATGACTGGCGAAACCGGAACCCTTGGTTATATGGCTCCAGAGGTTCTCAATGGAAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTTTGTGGGAAATATACTGCTGTGATATGCCGTATCCCGACCTTAGCTTCTCAGAAGTGACTTCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTGCAAACGTAATGAAGCGATGTTGGGATGCTAACCCCGACAAGCGTCCAGAGATGGACGAGGTTGTAACCATGTTGGAAGCAATCGACACGTCGAAGGGTGGAGGTATGATCCCCCTCGATCAGTCTCAAGGCTGTTTTTGCTTCCGCAGGTACCGAGGGCCTTGA | 1134 | 47.27 | MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKRKEDEEGGGGGGAGGGCGRPAITRQDWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3512089 | 3516027 | + | Maker00001864 | Lcy10g0222 | 643733 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0222 | 377 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
Lcy10g0222 | 377 | MobiDBLite | consensus disorder prediction | 30 | 63 | - | - | |
Lcy10g0222 | 377 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 348 | IPR011009 | - | |
Lcy10g0222 | 377 | FunFam | Kinase suppressor of Ras 1 | 63 | 158 | - | - | |
Lcy10g0222 | 377 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 215 | 227 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 53 | 349 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Lcy10g0222 | 377 | SMART | serkin_6 | 74 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | ProSiteProfiles | Protein kinase domain profile. | 74 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | Pfam | Protein tyrosine and serine/threonine kinase | 76 | 348 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | PRINTS | Tyrosine kinase catalytic domain signature | 209 | 227 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | PRINTS | Tyrosine kinase catalytic domain signature | 275 | 297 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | PRINTS | Tyrosine kinase catalytic domain signature | 319 | 341 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | PRINTS | Tyrosine kinase catalytic domain signature | 171 | 184 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g0222 | 377 | Gene3D | Transferase(Phosphotransferase) domain 1 | 174 | 364 | - | - | |
Lcy10g0222 | 377 | FunFam | Serine/threonine-protein kinase HT1 | 174 | 359 | - | - | |
Lcy10g0222 | 377 | CDD | STKc_MAP3K-like | 80 | 348 | - | - | |
Lcy10g0222 | 377 | Gene3D | Phosphorylase Kinase; domain 1 | 61 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0222 | Lcy-Chr10:3512089 | Lcy11g1570 | Lcy-Chr11:39503487 | 1.26E-191 | dispersed | |
Lcy2g0649 | Lcy-Chr2:5539066 | Lcy10g0222 | Lcy-Chr10:3512089 | 1.62E-235 | transposed | |
Lcy10g0222 | Lcy-Chr10:3512089 | Lcy13g0875 | Lcy-Chr13:15154924 | 6.01E-27 | wgd | |
Lcy10g0222 | Lcy-Chr10:3512089 | Lcy3g0133 | Lcy-Chr3:3385088 | 4.54E-31 | wgd | |
Lcy10g0222 | Lcy-Chr10:3512089 | Lcy4g1553 | Lcy-Chr4:39289690 | 3.08E-39 | wgd | |
Lcy10g0222 | Lcy-Chr10:3512089 | Lcy5g2226 | Lcy-Chr5:45283082 | 5.78E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65369 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0222 | - | - | - | 0.0 |