Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0222 ATGAAAGAGAAGAGTGAAAGTGGAGGTGGGTATGTGAGGGCAGATCAGATAGATCTGAAGAGCTTGGACGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGAAAGGAAGACGAGGAAGGCGGCGGTGGTGGTGGTGCCGGAGGCGGCTGCGGAAGGCCGGCGATCACCAGGCAGGACTGGGAGATTGACCCTTCTAAACTCATCATCAAAAGCGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGCCAAGATGTTGCTGTTAAACTTCTTGACTGGGGAGAAGAGGGTCATAGGTCGGAGGCAGAAATCGCTTCTCTTAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCTACAATAGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCAAGCAATATTTGTTGTGTCGTCGTTGAATATTGTCCTGGTGGTGCTCTGAAATCTTACCTCATAAAGAACCGGAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACAAGAACGGTAAAAATTGCAGACTTTGGTGTTGCTCGTGTTGAGGCCTCAAATCCCAACGATATGACTGGCGAAACCGGAACCCTTGGTTATATGGCTCCAGAGGTTCTCAATGGAAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTTTGTGGGAAATATACTGCTGTGATATGCCGTATCCCGACCTTAGCTTCTCAGAAGTGACTTCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTGCAAACGTAATGAAGCGATGTTGGGATGCTAACCCCGACAAGCGTCCAGAGATGGACGAGGTTGTAACCATGTTGGAAGCAATCGACACGTCGAAGGGTGGAGGTATGATCCCCCTCGATCAGTCTCAAGGCTGTTTTTGCTTCCGCAGGTACCGAGGGCCTTGA 1134 47.27 MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKRKEDEEGGGGGGAGGGCGRPAITRQDWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3512089 3516027 + Maker00001864 Lcy10g0222 643733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0222 377 MobiDBLite consensus disorder prediction 30 48 - -
Lcy10g0222 377 MobiDBLite consensus disorder prediction 30 63 - -
Lcy10g0222 377 SUPERFAMILY Protein kinase-like (PK-like) 60 348 IPR011009 -
Lcy10g0222 377 FunFam Kinase suppressor of Ras 1 63 158 - -
Lcy10g0222 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 53 349 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Lcy10g0222 377 SMART serkin_6 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 Pfam Protein tyrosine and serine/threonine kinase 76 348 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 PRINTS Tyrosine kinase catalytic domain signature 209 227 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 PRINTS Tyrosine kinase catalytic domain signature 275 297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 PRINTS Tyrosine kinase catalytic domain signature 319 341 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 PRINTS Tyrosine kinase catalytic domain signature 171 184 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g0222 377 Gene3D Transferase(Phosphotransferase) domain 1 174 364 - -
Lcy10g0222 377 FunFam Serine/threonine-protein kinase HT1 174 359 - -
Lcy10g0222 377 CDD STKc_MAP3K-like 80 348 - -
Lcy10g0222 377 Gene3D Phosphorylase Kinase; domain 1 61 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0222 Lcy-Chr10:3512089 Lcy11g1570 Lcy-Chr11:39503487 1.26E-191 dispersed
Lcy2g0649 Lcy-Chr2:5539066 Lcy10g0222 Lcy-Chr10:3512089 1.62E-235 transposed
Lcy10g0222 Lcy-Chr10:3512089 Lcy13g0875 Lcy-Chr13:15154924 6.01E-27 wgd
Lcy10g0222 Lcy-Chr10:3512089 Lcy3g0133 Lcy-Chr3:3385088 4.54E-31 wgd
Lcy10g0222 Lcy-Chr10:3512089 Lcy4g1553 Lcy-Chr4:39289690 3.08E-39 wgd
Lcy10g0222 Lcy-Chr10:3512089 Lcy5g2226 Lcy-Chr5:45283082 5.78E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65369 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0222 - - - 0.0