Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0251 ATGGAATCTGGCCGGTTCTTGTTTAATCCGCCGGCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCGGTGCCGATCCTTTTCTGCGAGGAGGAAGAACGATGATGAGCATGAGCATGCAAGAGAGTCCAAAGGGGCGACCATTTTTTAGATCCCCCGACGATCTTTACGACGATGAATATTACGACGAGCTTTACCCTGAGAAGAAGCGTCGTCTGACCCATGACCAGGTTCAAATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTAGAGCCAGAGAGGAAATCCCAACTGGCTAAGAAGTTAGGCCTGCAGCCAAGGCAGGTGGCCGTATGGTTCCAAAACCGCCGTGCTCGGTGGAAGACGAAGCAGCTCGAGAGGGACTATGATGTTCTTAAAGCCTCATATGATTTGCTTATGTCAAACTATGACTCCATCGTCAAAGAGAATGCTGTGCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCTAGCCAAAGAGCTGGATGGAGGAGAAGCACCATTTCCATGTATAACATCGGAGCCCCTTCTAGCAGACACTGCCCATGTCTCCGCCCCACACTCCGGCAGAAAGGCAGAAGATCGTCTCAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCCACAGCTGATCGACAGCGGTGATTCTTACTTCCCCAGCAACGAGTATCCGCAATGTGTACCTCTGCCTGCTGGGTTGCAAGTTGAACATGATGATAGGAATGACAATAGCAACTACTTGTTCTCAGACATGTTCGCAGCAACAAACCAACAGAATCAGGTGGGAGGACCTTCAGCTTGGTGGGCATGGCCTTAG 852 50.12 MESGRFLFNPPACGGNMLYLGGAGADPFLRGGRTMMSMSMQESPKGRPFFRSPDDLYDDEYYDELYPEKKRRLTHDQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCLAKELDGGEAPFPCITSEPLLADTAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSNEYPQCVPLPAGLQVEHDDRNDNSNYLFSDMFAATNQQNQVGGPSAWWAWP 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4055053 4058918 + Maker00001622 Lcy10g0251 643762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0251 283 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy10g0251 283 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Lcy10g0251 283 MobiDBLite consensus disorder prediction 192 212 - -
Lcy10g0251 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 46 246 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lcy10g0251 283 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Lcy10g0251 283 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Lcy10g0251 283 SUPERFAMILY Homeodomain-like 65 126 IPR009057 -
Lcy10g0251 283 SMART HOX_1 67 128 IPR001356 GO:0003677(InterPro)
Lcy10g0251 283 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Lcy10g0251 283 Gene3D - 64 130 - -
Lcy10g0251 283 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Lcy10g0251 283 Pfam Homeodomain 69 122 IPR001356 GO:0003677(InterPro)
Lcy10g0251 283 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0251 Lcy-Chr10:4055053 Lcy5g2284 Lcy-Chr5:45826600 6.15E-40 dispersed
Lcy10g0251 Lcy-Chr10:4055053 Lcy10g1934 Lcy-Chr10:43434046 1.77E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18931 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0251 K09338 - csv:101212142 488.804