Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0251 | ATGGAATCTGGCCGGTTCTTGTTTAATCCGCCGGCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCGGTGCCGATCCTTTTCTGCGAGGAGGAAGAACGATGATGAGCATGAGCATGCAAGAGAGTCCAAAGGGGCGACCATTTTTTAGATCCCCCGACGATCTTTACGACGATGAATATTACGACGAGCTTTACCCTGAGAAGAAGCGTCGTCTGACCCATGACCAGGTTCAAATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTAGAGCCAGAGAGGAAATCCCAACTGGCTAAGAAGTTAGGCCTGCAGCCAAGGCAGGTGGCCGTATGGTTCCAAAACCGCCGTGCTCGGTGGAAGACGAAGCAGCTCGAGAGGGACTATGATGTTCTTAAAGCCTCATATGATTTGCTTATGTCAAACTATGACTCCATCGTCAAAGAGAATGCTGTGCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCTAGCCAAAGAGCTGGATGGAGGAGAAGCACCATTTCCATGTATAACATCGGAGCCCCTTCTAGCAGACACTGCCCATGTCTCCGCCCCACACTCCGGCAGAAAGGCAGAAGATCGTCTCAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCCACAGCTGATCGACAGCGGTGATTCTTACTTCCCCAGCAACGAGTATCCGCAATGTGTACCTCTGCCTGCTGGGTTGCAAGTTGAACATGATGATAGGAATGACAATAGCAACTACTTGTTCTCAGACATGTTCGCAGCAACAAACCAACAGAATCAGGTGGGAGGACCTTCAGCTTGGTGGGCATGGCCTTAG | 852 | 50.12 | MESGRFLFNPPACGGNMLYLGGAGADPFLRGGRTMMSMSMQESPKGRPFFRSPDDLYDDEYYDELYPEKKRRLTHDQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCLAKELDGGEAPFPCITSEPLLADTAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSNEYPQCVPLPAGLQVEHDDRNDNSNYLFSDMFAATNQQNQVGGPSAWWAWP | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4055053 | 4058918 | + | Maker00001622 | Lcy10g0251 | 643762 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0251 | 283 | ProSitePatterns | 'Homeobox' domain signature. | 99 | 122 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lcy10g0251 | 283 | ProSiteProfiles | 'Homeobox' domain profile. | 64 | 124 | IPR001356 | GO:0003677(InterPro) | |
Lcy10g0251 | 283 | MobiDBLite | consensus disorder prediction | 192 | 212 | - | - | |
Lcy10g0251 | 283 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 46 | 246 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Lcy10g0251 | 283 | PRINTS | Lambda-repressor HTH signature | 104 | 120 | IPR000047 | GO:0003677(InterPro) | |
Lcy10g0251 | 283 | PRINTS | Lambda-repressor HTH signature | 95 | 104 | IPR000047 | GO:0003677(InterPro) | |
Lcy10g0251 | 283 | SUPERFAMILY | Homeodomain-like | 65 | 126 | IPR009057 | - | |
Lcy10g0251 | 283 | SMART | HOX_1 | 67 | 128 | IPR001356 | GO:0003677(InterPro) | |
Lcy10g0251 | 283 | CDD | homeodomain | 69 | 125 | IPR001356 | GO:0003677(InterPro) | |
Lcy10g0251 | 283 | Gene3D | - | 64 | 130 | - | - | |
Lcy10g0251 | 283 | FunFam | Homeobox-leucine zipper protein HAT5 | 62 | 126 | - | - | |
Lcy10g0251 | 283 | Pfam | Homeodomain | 69 | 122 | IPR001356 | GO:0003677(InterPro) | |
Lcy10g0251 | 283 | Pfam | Homeobox associated leucine zipper | 124 | 164 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0251 | Lcy-Chr10:4055053 | Lcy5g2284 | Lcy-Chr5:45826600 | 6.15E-40 | dispersed | |
Lcy10g0251 | Lcy-Chr10:4055053 | Lcy10g1934 | Lcy-Chr10:43434046 | 1.77E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18931 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0251 | K09338 | - | csv:101212142 | 488.804 |