Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0256 ATGGATAGCCACCAGATTCTGGCGAAACAGAAACTGGGCTTCTCTGCTTCATTCCGAGAAGCCTTCAAAATCATCTTTCATCGTCCAAACTTCATTACTCTCATCATCATCATCTACATCCCTCTCTTCACCTCTCTCCTCGCCCACCAAATTCTCCTTCACCCAACCTTCATTCAACTCCTCAAGCTTCTATCTCAGGAAAATCCTTTTGATCCATCTCATGTGTACGTCATCAGGTGTCAATTAGGTGATGGCAGAGACTGCTTCTCACAGCGCTCTTCTGATAACAATAGCTTCCAAGCAACTCTCTCCCACAGGTTTTTTATCTCAACCCTTCTCTCTTCAGGAATCATCTTCATTCTTGACCTTCTCTCCACAATCTCAACGGTCTCCATATCATCAGCATTATATGGAGGAAACTCCCAAATGGGCTTTAAAGAGATGATAGTTGAAGTCAGAAAGCTGGTGGCTCTAAGACTGAGAGGGTCATTGGCAACATCTCTATATGCCCTTTTGCTAGCTTCACTCACTCAGTTGGGTTTGGTTGCTTTGTCAACAAACATGATTTTGATGCCAAAAAGCTCATTGATCTTTGGGCCAATATTTGCATTTTTGTTGACAAAATACATGGAGTGGAGTGCTGTTTGGAACATGGGAATTGTTCTCTCAATCTTGGATAAGAACCAGGGCTACATAGCAATTGGAGTGGCAGCATATCTAAGCAGAGGCAGCAGGAAGCTAGGGTTCAGTTTGATGCTGGTTTTCTTTGCTTTGAAGGTGGCTTTTGGGCTGCCATGTCTCTATGCTTTGTGGAATGAGGGGAGTTGTGGGGTTTTGGGGAATGTGGTGTCTACAAAACCGCCATGGCCAAGCATCAAAGTTCTTGGCTATTACACATCCACTTGGCCCCTCCCCCATTTCGCATGCACCAACCCAATTATATTCCCTTTTCCTCCTAAGCTTCTCATCTTCTTTCTTCCTCCTCCTCTCTCCATCAACCCTGTCTCTCTCTCACATTTCTCGCCGGGGAACTCGACAAAACCCCGGAATCCGCCATGGAAGATGAATAGAATCATCCACTCGCCGGCGTCCACATTCCGCCCCTTTCGGCGAAACCTAATCGGCTCATCCTCCGATTCCGCCACGACCGCCGTAGCCGCCGCGGCCGCCGATGAACACCCGAACTACATCCTCCTCCGCTACCAAATCCTCGACCCCGACAGCGACATTGTAGCGCAATGGAACCGCGTGTTTCTAATCACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCGGTCAGCGGGCCGGCCTGCCTGACCACCCAGATGAATCTGGCAGTGGTGATCACGTTCTTCAGAACGGTGACGGATCTGTTCTTCTTGTTGCACATGGTGCTCAAGTTTCGAACGGCGTATGTGGCTCCGAGTTCTAGGGTTTTTGGAAGAGGAGAGCTGGTTATGGATGCCAGAGCCATTGCTACGCGATATTTGAAGTCTGATTTTGTGATTGATCTCGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGACACTCCAGAGCAGATCATGCCAACAACACAATCGCTCTCCTTGTTCTGCTCCAATATGTTCCAAGGCTGTTCCTCATTTTCCCTCTCAACCAACGTATCGTCAAAACTACTGGTGTTGTTGCCAAAACTGCCTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTGTTGGGATCTACATGGTATTTGTTGTCCATAGGGCGACAGTTCTCTTGCTGGAGTTCAGAGTGTGCAAAGGAGAATGCCTCTAAGGTTCTAACTTGCCTTCCCATCTACTTGGATTGTGCCAGTTTGAATAACACAGAAAGACAATATTGGCTTAATATCACTCAAGTTACTTCCAAATGCGATCCGAGGAATAAAAATATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTTACCAATGATGTTGCCTCCTCCCACTTCTTTGCAAAGTACTTCTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGGTATGGCCTCCCAATTGACAATTTTTCTCATTTTAAAAGCACTTTTATGTTGGATGTTTTGAAGACATACTTTGATCTAACTTGGTTGGTTTCTATTTCCCCTTCCCATTTTGCTTCCATGTTGAAGACATGTTTGCAATCAATGACGGTGAGACTCGAAGAATGGAGGATAAAGCGAAGGGACACCGAAGAATGGATGAGACGTCGCCAATTACCTCCAGATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGGTGGCTACAAGAGGAGTTAATGAAGAATCCATATTGCGTTCGTTGCCTATCGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTATCACTCGTTCGTCGTGTATGTATTCCTAAACATGTTTCTATATTACTTGTTTGTCAAAGTTTTCTTTACAAATTAAAAGGTTGGATTCTGCAGGTTCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCTATATGTGAACGTCTTGTCTCGTCCTTGTGTACCCAAGGAACCTACATTGTGCGAGAGGATGATCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACAACAAATGGCGGTCGATCAGGGTTCTTCAACTCCATCACACTAAAACCAGGTGATTTCTGTGGTGAAGAACTATTGACATGGGCCTTGATGCCAAGTTCCAATTTAAATATGCCTTCTTCTACTCGAACTGTCCGAGCGCTCACAGAAGTTGAAGCTTTCGCTCTTCGAGCCGAGGACCTCAAGTTTGTCGCTGGTCAATTCAAACGCCTACATAGCAAGAAACTACAGCATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCCTGCTTGATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAAATTAGCATTGAGAGAGAGCTTATGCTACATAGATTCAATAGAACAAGATAACGAGTACGACATCGAGCTAGCAGAAGAAGACTATGACGACGACAGCGACGAAGATATGTCATCTACAGACTACATGAACAAAACTCAAAATCTTGGGGCCACACTTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAATTAATCAAAAGGGGCAAACATCCAAGCCTTCCAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 3288 44.92 MDSHQILAKQKLGFSASFREAFKIIFHRPNFITLIIIIYIPLFTSLLAHQILLHPTFIQLLKLLSQENPFDPSHVYVIRCQLGDGRDCFSQRSSDNNSFQATLSHRFFISTLLSSGIIFILDLLSTISTVSISSALYGGNSQMGFKEMIVEVRKLVALRLRGSLATSLYALLLASLTQLGLVALSTNMILMPKSSLIFGPIFAFLLTKYMEWSAVWNMGIVLSILDKNQGYIAIGVAAYLSRGSRKLGFSLMLVFFALKVAFGLPCLYALWNEGSCGVLGNVVSTKPPWPSIKVLGYYTSTWPLPHFACTNPIIFPFPPKLLIFFLPPPLSINPVSLSHFSPGNSTKPRNPPWKMNRIIHSPASTFRPFRRNLIGSSSDSATTAVAAAAADEHPNYILLRYQILDPDSDIVAQWNRVFLITCLIALFIDPLYFYTSSVSGPACLTTQMNLAVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRHSRADHANNTIALLVLLQYVPRLFLIFPLNQRIVKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWSSECAKENASKVLTCLPIYLDCASLNNTERQYWLNITQVTSKCDPRNKNIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLRYGLPIDNFSHFKSTFMLDVLKTYFDLTWLVSISPSHFASMLKTCLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWVATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVCIPKHVSILLVCQSFLYKLKGWILQVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSNLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKKLALRESLCYIDSIEQDNEYDIELAEEDYDDDSDEDMSSTDYMNKTQNLGATLLASKFAANTRRGINQKGQTSKPSSLKMPKLFKPDEPDFSMDG 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4165205 4171441 - Maker00001604 Lcy10g0256 643767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0256 1095 Gene3D Helix hairpin bin 745 808 - -
Lcy10g0256 1095 SMART cnmp_10 843 974 IPR000595 -
Lcy10g0256 1095 MobiDBLite consensus disorder prediction 1081 1095 - -
Lcy10g0256 1095 ProSiteProfiles cAMP/cGMP binding motif profile. 843 973 IPR000595 -
Lcy10g0256 1095 Pfam Cyclic nucleotide-binding domain 866 953 IPR000595 -
Lcy10g0256 1095 SUPERFAMILY cAMP-binding domain-like 747 968 IPR018490 -
Lcy10g0256 1095 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 398 1077 - -
Lcy10g0256 1095 CDD CAP_ED 843 974 IPR000595 -
Lcy10g0256 1095 Gene3D Jelly Rolls 841 961 IPR014710 -
Lcy10g0256 1095 MobiDBLite consensus disorder prediction 1062 1095 - -
Lcy10g0256 1095 SUPERFAMILY Voltage-gated potassium channels 405 689 - -
Lcy10g0256 1095 FunFam Cyclic nucleotide-gated ion channel 1 841 959 - -
Lcy10g0256 1095 MobiDBLite consensus disorder prediction 1062 1078 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0256 Lcy-Chr10:4165205 Lcy8g1911 Lcy-Chr8:45376747 5.71E-215 dispersed
Lcy10g0256 Lcy-Chr10:4165205 Lcy10g0257 Lcy-Chr10:4172144 1.88E-114 tandem
Lcy2g0228 Lcy-Chr2:1801172 Lcy10g0256 Lcy-Chr10:4165205 5.64E-260 transposed
Lcy2g0647 Lcy-Chr2:5522638 Lcy10g0256 Lcy-Chr10:4165205 2.34E-300 transposed
Lcy9g1763 Lcy-Chr9:42827391 Lcy10g0256 Lcy-Chr10:4165205 1.10E-272 transposed
Lcy10g0256 Lcy-Chr10:4165205 Lcy10g0315 Lcy-Chr10:5737793 9.11E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0256 K05391 - csv:101216651 1198.34