Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0262 ATGTCGCAGCTTTCGTCCTCCGTTCTTCAACCTTCGGCCGCTGCAGGTATCATTCCTATCTTCTTCAACCTTCGGTCGCCGCAGCTGTCATTCTTCCCTTCTTCAACCTTTGGCCGTCGGAGCTCTCCTTCCCCTTGTCTTCAACCCACGACAGCGAACAAACCTCAGCGACGGCATCAAGGCGACGACTGGACAGAGACCAAAAGCATCCGACTTTTAACCGTTGAATTCCAAGAGGATATGAACATTAGAAAAAATGTCCAGCATTCTCTTGCTACAGAGCTTCAGAATCTTTCTATGGACCTTCGTAGAAGACGGTCAATGTATCTGAAACGTCTACAGCAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGCAACAAAACTCTACATGAGGATGATGAATATGGTGAATTTGTATGTGCTCATCTCTTTGGTTACCTTGACTTATCAAGACTTAACTTTTCTCATGCAAGGGGAACCATTGAAAACCAAACGATGACATTTGGAATTGATGAGCAGCACATCCAGGGAAGGGAGAAAGAGATCAGACAGGTTGTGAAATCAGTAAATGAGCTTGCACAAATTATGAAGGATCTCTCAACCCTTGTCATAGAGCAGGGTACTATAGTCGATAGGATCGACCACAATATTCAGAATGTTGCTACAACCGTGGAAGAGGGCTATAAACAGCTTCAGAAGGCGGAGAAGACTCAGAAGGATGGAGGAATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTCATTTTGAGAACTGCTGGCGTCTCCTCGGCTTGGATTTAG 822 44.65 MSQLSSSVLQPSAAAGIIPIFFNLRSPQLSFFPSSTFGRRSSPSPCLQPTTANKPQRRHQGDDWTETKSIRLLTVEFQEDMNIRKNVQHSLATELQNLSMDLRRRRSMYLKRLQQQKEGHDGIDLEINLNGNKTLHEDDEYGEFVCAHLFGYLDLSRLNFSHARGTIENQTMTFGIDEQHIQGREKEIRQVVKSVNELAQIMKDLSTLVIEQGTIVDRIDHNIQNVATTVEEGYKQLQKAEKTQKDGGMVKCATVLVIMCFILRTAGVSSAWI 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4233133 4235577 + Maker00001736 Lcy10g0262 643773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0262 273 CDD SNARE_syntaxin16 181 239 - -
Lcy10g0262 273 MobiDBLite consensus disorder prediction 35 65 - -
Lcy10g0262 273 SUPERFAMILY t-snare proteins 80 233 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy10g0262 273 PANTHER SYNTAXIN 76 258 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy10g0262 273 SMART tSNARE_6 173 240 IPR000727 -
Lcy10g0262 273 MobiDBLite consensus disorder prediction 35 55 - -
Lcy10g0262 273 ProSitePatterns Syntaxin / epimorphin family signature. 184 223 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy10g0262 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 178 240 IPR000727 -
Lcy10g0262 273 Gene3D - 50 232 - -
Lcy10g0262 273 Pfam SNARE domain 214 263 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0262 Lcy-Chr10:4233133 Lcy3g1779 Lcy-Chr3:45047568 3.54E-102 dispersed
Lcy10g0262 Lcy-Chr10:4233133 Lcy13g1039 Lcy-Chr13:22711472 1.83E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0262 K08489 - csv:101204192 269.24