Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0302 ATGGGGGATGACTTGGGGAAGCTCTTGCTCACGAAAGAGCTTCTGATTTTGGGAATGGAGGGGTTGAAATTGGTAATGCAATTGAAATTTCTTGTCTCCTGTGCTGACATTCTCGCCGTCGCCACTCGCGACCTGGTCACCATGGTCGGCGGACCTTATTACAACGTTCTCCTTGGTCGCCGTGACGGTCGTGTGTCGAAAGCTTCGACGATTCCTGGTGCTCTGCCGATGGCTACCTCGCCGATGCCTCAGATTATTGATATTTTTAAAGCTCGCGGGTTTACTGTGCAGGAAATGGTAGCGTTATGTGGTGCTCATACGATTGGATTCTCGCATTGTAAGGAATTCAGTTCTCAGATCTATAATTATAGCAAGTCTTCTTCCTTTGATACTCAGTATAACCCTAGATTCGCGCAAGGGTTGCAGAAGGCTTGTTCTGGTTTTGAAAAGAATCCTACATTATCGGTTTTTAATGACATTATGACTCCCAACAAGTTTGATAACTCTTACTTCCAGAATCTGCCTAAGGGTCTGGGGATCTTGAAGTCTGATCATGGATTGTATAGCGATTGGAGGACGAGGCCGTTTGTGGAGGCGTATGCGGCGGATGAGAACAAGTTCTTCAAGGATTTTGCTCGGGCGATGGAGAAGTTGAGTAATTATAAAGTTATGACAGGGAATCAAGGGGAGATTCGGCATAGCTTTGTAGAAGGGTGCTTCAAGCTTTTGAAATGGCAATGCTCACATGGAAGATACTGCCAGAGCCAGACAATGATTGAACAGTCTGCTTCCAGCTATCTGTTTCCATATGCATGA 816 45.83 MGDDLGKLLLTKELLILGMEGLKLVMQLKFLVSCADILAVATRDLVTMVGGPYYNVLLGRRDGRVSKASTIPGALPMATSPMPQIIDIFKARGFTVQEMVALCGAHTIGFSHCKEFSSQIYNYSKSSSFDTQYNPRFAQGLQKACSGFEKNPTLSVFNDIMTPNKFDNSYFQNLPKGLGILKSDHGLYSDWRTRPFVEAYAADENKFFKDFARAMEKLSNYKVMTGNQGEIRHSFVEGCFKLLKWQCSHGRYCQSQTMIEQSASSYLFPYA 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5387420 5391342 + Maker00010954 Lcy10g0302 643813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0302 271 FunFam Peroxidase 76 218 - -
Lcy10g0302 271 ProSiteProfiles Plant heme peroxidase family profile. 31 232 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Haem peroxidase superfamily signature 159 174 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Haem peroxidase superfamily signature 32 49 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Haem peroxidase superfamily signature 98 113 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Haem peroxidase superfamily signature 50 62 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 SUPERFAMILY Heme-dependent peroxidases 31 233 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 Pfam Peroxidase 31 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 CDD secretory_peroxidase 32 234 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy10g0302 271 Gene3D Peroxidase, domain 2 76 218 - -
Lcy10g0302 271 PANTHER - 31 234 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 Gene3D - 30 233 - -
Lcy10g0302 271 PRINTS Plant peroxidase signature 50 65 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Plant peroxidase signature 173 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Plant peroxidase signature 213 226 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Plant peroxidase signature 31 41 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Plant peroxidase signature 97 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g0302 271 PRINTS Plant peroxidase signature 157 172 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0302 Lcy-Chr10:5387420 Lcy10g1952 Lcy-Chr10:43564455 4.75E-91 dispersed
Lcy10g0302 Lcy-Chr10:5387420 Lcy12g1382 Lcy-Chr12:30983940 3.12E-33 wgd
Lcy10g0302 Lcy-Chr10:5387420 Lcy6g1503 Lcy-Chr6:23763866 7.75E-36 wgd
Lcy10g0302 Lcy-Chr10:5387420 Lcy7g1962 Lcy-Chr7:46171679 3.16E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0302 K00430 - csv:101219829 390.578