Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0303 ATGGTCTCGGTCCAAATCGGTCTTCACAAGCGCCATCGTCTTCACAATCGTCGTCGTCTAGAGCTTGTCAGAGCTGCCAAATATGAAAATCCTCATCACCGTTGCCTCCTTTTTTTTCCGATCAGCCACGTCGTCGCCTCAGATCTGAAACGGAATTCACCCATGGGTTCATTTGTTCGAACGCGAAAAACCACCATGGCCGCCGCCGGAGGAACAGAGGCTTTCCCCGATCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAGCTCGATTTCCTCCCCTTCACCTGCGACGGTTGCCAAAAGGTGTTCTGTTTGGAGCATCGCGGTTTCAAATCCCACGACTGCCCCAAATCCGATCGCGACAGCAGAAAAGTGGTGGTCTGCGAAATCTGCTCGACGTCGATCGAGACCACCGGGAAGGACGGCGGCGACGAGAGGAGGATCCTGGAGAGGCATGAGAAATCGGGAAATTGTGATCCGAGGAAGAAGAAGAAGCCGACGTGTGCGGTGAGGCGGTGCCGGGAAATTCTCACGTTTTCCAATACTTGCGTGTGTAAAACTTGCCGGTTGAAGGTGTGTTTGAAGCATCGGTTTCCGGCAGAGCATGGCTGTGGACGGTCGTCTACGGCGGCAGCGGCGGTGGTGGATGAGGGGCGGTGGAATGAAAAGTTTATGGCGGCATTGGAGTTGAGGAGTAGCGGTGATTGTGGGAAGAGGGAACGCTCGACGGCGGGCAAGGGTTCTCCGACTGCCTCCCCATCTGTTAAAGCTTGTTGA 780 55.64 MVSVQIGLHKRHRLHNRRRLELVRAAKYENPHHRCLLFFPISHVVASDLKRNSPMGSFVRTRKTTMAAAGGTEAFPDLGRHCQHSDCHQLDFLPFTCDGCQKVFCLEHRGFKSHDCPKSDRDSRKVVVCEICSTSIETTGKDGGDERRILERHEKSGNCDPRKKKKPTCAVRRCREILTFSNTCVCKTCRLKVCLKHRFPAEHGCGRSSTAAAAVVDEGRWNEKFMAALELRSSGDCGKRERSTAGKGSPTASPSVKAC 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5407150 5409586 + Maker00010759 Lcy10g0303 643814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0303 259 ProSiteProfiles Zinc finger AN1-type profile. 76 124 IPR000058 GO:0008270(InterPro)
Lcy10g0303 259 SUPERFAMILY AN1-like Zinc finger 129 210 IPR035896 -
Lcy10g0303 259 SMART AN1_Zf_4 82 121 IPR000058 GO:0008270(InterPro)
Lcy10g0303 259 SMART AN1_Zf_4 169 210 IPR000058 GO:0008270(InterPro)
Lcy10g0303 259 Gene3D - 67 134 IPR035896 -
Lcy10g0303 259 Pfam AN1-like Zinc finger 169 207 IPR000058 GO:0008270(InterPro)
Lcy10g0303 259 Pfam AN1-like Zinc finger 82 120 IPR000058 GO:0008270(InterPro)
Lcy10g0303 259 ProSiteProfiles Zinc finger AN1-type profile. 163 213 IPR000058 GO:0008270(InterPro)
Lcy10g0303 259 MobiDBLite consensus disorder prediction 233 259 - -
Lcy10g0303 259 Gene3D - 146 220 IPR035896 -
Lcy10g0303 259 SUPERFAMILY AN1-like Zinc finger 74 119 IPR035896 -
Lcy10g0303 259 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 74 234 - GO:0005737(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1952 Lcy-Chr1:23342455 Lcy10g0303 Lcy-Chr10:5407150 3.65E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0303 - - - 0.0