Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0315 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATCGGCGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCAAATTTGTCAGTGCCCTCTGGATCAAGCAAGATGAAGAAATGCCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATCAGCCGGGCGAAGCCTCGAAACGCGTCGAAATCGTTCCGAAAGGGAGTCCAAATGAGCTCCGACGGAATCATGACCCTAGGCCGGTCGCTCCGCTCCGGCGTGTCCAGAGTCATCTTCCCCGAGGATCTGAAAGTATCGGACCAAAAGATCTTCGATCCGCAGGACAAATCGCTCCTCTTCTGGAACAAGCTGTTCGTCTTGTGCTGTATCCTCGCCGTCTCCGTCGATCCGCTGTTCTTCTACCTTCCGGTCTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACCACCACCACCCTCCGTACGGCCATCGATGTGTTCTACTTGATTCGGATGGGGTTTCAGTTCCGGACGGCTTACGTTGCGCCGTCGTCGAGGGTGTTTGGTCGCGGCGAGCTTGTGATCGATCCGGCGGACATCGCTAGGCGGTATCTTCAGCGCTATTTCGTCGCGGATTTTCTCTCTGTTTTGCCTCTCCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGTTCAGAAGTGTTGGCAACCAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTCATTAGATTTATACCTTTGAACATTGAGCTTAAGAAGACGGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTATTATCTCCTCTTGTACATGCTTGCCAGTCACATAGCGGGAGCATTTTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGCGACAAGCATGCAAAAGCAGTGGGAAGTGCAACATTAACTTTTTGTACTGTGGGAATAAGCACATGTCTGGATATAAGGAGTGGAGAAATATTAGCGTTGATGTTCTCACAAAGAAATGCACTGCTATTGGAGACAATTTGCCATTCAACTATGGCATTTACACTCAGGCCATTGCCTCTGGCATTGTTCAGTCAAGGACTTTCTTCTCCAAGTTCTGCTACTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAAGGGTTGCTCACCAGTACCTATCCTGGAGAGGTTATCTTTTCGATACTAATTGCAATTTCTGGGCTCCTCCTCTTTGCACTCTTGATTGGAAACATGCAAACGTATCTCCAATCTCTAACAGTCCGGCTGGAAGAGATGCGCATCAAGAGGAGAGACTCTGAGCAGTGGATGCACCATCGGCTGCTTCCGCCGGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTTGAAACTAGAGGAGTCGATGAAGAGAGCTTGGTTCAAAGTCTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTCAGAAGGGTGCCTCTATTTGCAAACATGGACGAGCGTCTACTTGACGCGATATGCGAGAGGCTAAAGCCAACACTATACACAGAGAATACATACATCGTCCGAGAAGGCGACCCAGTTGACGAAATGCTCTTCATAATCCGCGGCCGTCTCGAGAGCGTCACCACTGACGGCGGCCGGAGTGGCTTCTTCAACCGCGGCGTTTTGAAAGAAGGCGACTTCTGCGGCGAGGAGCTTCTGACATGGGCCCTCGACCCCAAGTCCGGCGCCAACCTCCCCTCCTCCACCCGTACCGTCCACGCCTTGACGGAGGTCGAGGCCTTCGCCCTGGAGGCCGAGGAGCTCAAGTTCGTCGCCAGCCAGTTCCGACGGCTCCACAGCCGGCAGGTCCAGCACACGTTCAGATTCTACTCGCAGCAGTGGCGGACGTGGGCGTCGTGTTTTATACAGGCGGCGTGGCGGCGGTACATAAAGCGGAAGATGGCCGAGCTGCGGCGGAAGGAGGAGGAGGAGGAGGATGCGGCGGCTGCGGCGGCGTATAGCTCGTCGAGGCTTGGGGCGACGATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGGCATCGGATGAGGAATGTGAGCAGCGGGAAGAGCTTGATTAACTTGCAGAAGCCGTCGGAGCCTGATTTTTCTGTGTATAAAGGAGAGTGA 2208 52.08 MFDCGGYKSQYIGGHKEKFVRLDDLDSNLSVPSGSSKMKKCRFNLEGLPLPFISRAKPRNASKSFRKGVQMSSDGIMTLGRSLRSGVSRVIFPEDLKVSDQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTLRTAIDVFYLIRMGFQFRTAYVAPSSRVFGRGELVIDPADIARRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACKSSGKCNINFLYCGNKHMSGYKEWRNISVDVLTKKCTAIGDNLPFNYGIYTQAIASGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGANLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYIKRKMAELRRKEEEEEDAAAAAAYSSSRLGATILASRFAANALRGHRMRNVSSGKSLINLQKPSEPDFSVYKGE 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5737793 5743496 + Maker00010843 Lcy10g0315 643826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0315 735 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Lcy10g0315 735 ProSiteProfiles IQ motif profile. 647 676 - -
Lcy10g0315 735 SMART cnmp_10 511 642 IPR000595 -
Lcy10g0315 735 CDD CAP_ED 511 642 IPR000595 -
Lcy10g0315 735 FunFam Cyclic nucleotide-gated ion channel 1 509 627 - -
Lcy10g0315 735 Pfam Ion transport protein 113 438 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0315 735 FunFam Cyclic nucleotide-gated ion channel 1 438 502 - -
Lcy10g0315 735 SUPERFAMILY Voltage-gated potassium channels 106 433 - -
Lcy10g0315 735 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Lcy10g0315 735 MobiDBLite consensus disorder prediction 715 735 - -
Lcy10g0315 735 Gene3D Helix hairpin bin 438 502 - -
Lcy10g0315 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 86 711 - -
Lcy10g0315 735 Coils Coil 659 682 - -
Lcy10g0315 735 Gene3D - 116 436 - -
Lcy10g0315 735 Gene3D Jelly Rolls 509 629 IPR014710 -
Lcy10g0315 735 Pfam Cyclic nucleotide-binding domain 532 622 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0315 Lcy-Chr10:5737793 Lcy12g0123 Lcy-Chr12:1551768 1.21E-263 dispersed
Lcy10g2044 Lcy-Chr10:44534837 Lcy10g0315 Lcy-Chr10:5737793 6.42E-108 transposed
Lcy4g1736 Lcy-Chr4:43233405 Lcy10g0315 Lcy-Chr10:5737793 3.86E-87 transposed
Lcy4g1737 Lcy-Chr4:43240603 Lcy10g0315 Lcy-Chr10:5737793 2.52E-86 transposed
Lcy10g0256 Lcy-Chr10:4165205 Lcy10g0315 Lcy-Chr10:5737793 9.11E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0315 K05391 - csv:101221166 1350.11