Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0391 | ATGGCTGGTTGTAGACTTAAGGTTTCATTGGTGTTGGTTTCAATAATGGCTGTTTTCATGCCAACTCTCCGAGCTGGCATTGCCGAGTTTGATGACTATTTGCTGCAAAAGGCCGACGAAGCCAAACAAGCTGCTCTTGAGGCCTTCCATCCTGACCCCATGAATGTTACTGACCATCTCAACCATCATGTTCATTTAGCTTTGCAGGGAAGCAATAGCACCAGGAGGAGCCTGAAGAAATACACTGGCCCTTGCTTGGCCACAAACCCGATCGACCGCTGCTGGCGTTGCAACCCAAAATGGGCCAACAAACGTAAGAGGCTTACCAAGTGCGTGCTTGGTTTTGGCCGAAAGACCACCGGTGGCAAGAGGGGCAAGATCTACGTCGTTACCGATGCATCGGACAGCGACGTCGTGAACCCTAAACCCGGAACCCTCCGATATGCTGCAGTTCAAAAACGTCCATTGTGGATCATATTTGGGCGTAGCATGATCATCAAGCTGACCAAGGAGCTGATGGTGACGAGTCACAAGACCATCGATGCTCGTGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAGTTCGCCAAGAATGTGATCATCCACGGCCTTCACATCCACCACATTATGGCGGCCGGCGGTGGCATGATCCGAGACACCCACAACCATGTCGGCATCCGAACCGTCAGCGACGGAGACGGCATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCACCTCTCCATGTCCAACTGCCAGGACGGACTCATCGACGCAATCCAAGGCTCCACTGCCATCACAATCTCCAACTCCCATTTCACTCATCACAACGACGTCATGTTGTTCGGTGCAAGCGACTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCCTTCAACCATTTCGGCAAAGGATTGGTGCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCACGTCGTCAACAACGACTACACCCACTGGCTCATGTACGCCATCGGTGGCAGCCAACATCCCACCATCATCAGTCAAGGAAACCGTTTCATTGCCCCACCGAACCCTGCAGCAAGACAGATTACGAACAGAAACTATGCACCAGAGAGTGTATGGAAAACATGGACATGGAGATCAGAAGGGGATCTGATGATGAATGGAGCGTATTTCATTCAGTCTGGAAATCCAAGCAAACGAAGGCCATACAGCAGATTGGACATGATCAAAGCTAAGCCTGGCACTTTTGTTAGAAGGCTCACACGCTTCGCTGGCTCACTCAACTGTTATGTCGGTCGCCCTTGTTAA | 1317 | 51.1 | MAGCRLKVSLVLVSIMAVFMPTLRAGIAEFDDYLLQKADEAKQAALEAFHPDPMNVTDHLNHHVHLALQGSNSTRRSLKKYTGPCLATNPIDRCWRCNPKWANKRKRLTKCVLGFGRKTTGGKRGKIYVVTDASDSDVVNPKPGTLRYAAVQKRPLWIIFGRSMIIKLTKELMVTSHKTIDARGANVHIAYGAGLSIQFAKNVIIHGLHIHHIMAAGGGMIRDTHNHVGIRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRLDMIKAKPGTFVRRLTRFAGSLNCYVGRPC | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8233553 | 8235573 | + | Maker00010764 | Lcy10g0391 | 643902 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0391 | 438 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 435 | IPR045032 | GO:0030570(InterPro) | |
Lcy10g0391 | 438 | Pfam | Pectate lyase | 173 | 354 | IPR002022 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 111 | 128 | IPR018082 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 379 | 403 | IPR018082 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 409 | 432 | IPR018082 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 171 | 187 | IPR018082 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 315 | 334 | IPR018082 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 337 | 356 | IPR018082 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 135 | 160 | IPR018082 | - | |
Lcy10g0391 | 438 | PRINTS | Pollen allergen Amb family signature | 235 | 256 | IPR018082 | - | |
Lcy10g0391 | 438 | Pfam | Pectate lyase, N terminus | 27 | 78 | IPR007524 | GO:0030570(InterPro) | |
Lcy10g0391 | 438 | SUPERFAMILY | Pectin lyase-like | 89 | 428 | IPR011050 | - | |
Lcy10g0391 | 438 | Gene3D | - | 88 | 431 | IPR012334 | - | |
Lcy10g0391 | 438 | SMART | amb_all | 163 | 360 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0391 | Lcy-Chr10:8233553 | Lcy5g2288 | Lcy-Chr5:45853840 | 9.96E-226 | dispersed | |
Lcy10g0387 | Lcy-Chr10:8079519 | Lcy10g0391 | Lcy-Chr10:8233553 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0391 | K01728 | - | csv:101202789 | 810.831 |