Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0391 ATGGCTGGTTGTAGACTTAAGGTTTCATTGGTGTTGGTTTCAATAATGGCTGTTTTCATGCCAACTCTCCGAGCTGGCATTGCCGAGTTTGATGACTATTTGCTGCAAAAGGCCGACGAAGCCAAACAAGCTGCTCTTGAGGCCTTCCATCCTGACCCCATGAATGTTACTGACCATCTCAACCATCATGTTCATTTAGCTTTGCAGGGAAGCAATAGCACCAGGAGGAGCCTGAAGAAATACACTGGCCCTTGCTTGGCCACAAACCCGATCGACCGCTGCTGGCGTTGCAACCCAAAATGGGCCAACAAACGTAAGAGGCTTACCAAGTGCGTGCTTGGTTTTGGCCGAAAGACCACCGGTGGCAAGAGGGGCAAGATCTACGTCGTTACCGATGCATCGGACAGCGACGTCGTGAACCCTAAACCCGGAACCCTCCGATATGCTGCAGTTCAAAAACGTCCATTGTGGATCATATTTGGGCGTAGCATGATCATCAAGCTGACCAAGGAGCTGATGGTGACGAGTCACAAGACCATCGATGCTCGTGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAGTTCGCCAAGAATGTGATCATCCACGGCCTTCACATCCACCACATTATGGCGGCCGGCGGTGGCATGATCCGAGACACCCACAACCATGTCGGCATCCGAACCGTCAGCGACGGAGACGGCATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCACCTCTCCATGTCCAACTGCCAGGACGGACTCATCGACGCAATCCAAGGCTCCACTGCCATCACAATCTCCAACTCCCATTTCACTCATCACAACGACGTCATGTTGTTCGGTGCAAGCGACTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCCTTCAACCATTTCGGCAAAGGATTGGTGCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCACGTCGTCAACAACGACTACACCCACTGGCTCATGTACGCCATCGGTGGCAGCCAACATCCCACCATCATCAGTCAAGGAAACCGTTTCATTGCCCCACCGAACCCTGCAGCAAGACAGATTACGAACAGAAACTATGCACCAGAGAGTGTATGGAAAACATGGACATGGAGATCAGAAGGGGATCTGATGATGAATGGAGCGTATTTCATTCAGTCTGGAAATCCAAGCAAACGAAGGCCATACAGCAGATTGGACATGATCAAAGCTAAGCCTGGCACTTTTGTTAGAAGGCTCACACGCTTCGCTGGCTCACTCAACTGTTATGTCGGTCGCCCTTGTTAA 1317 51.1 MAGCRLKVSLVLVSIMAVFMPTLRAGIAEFDDYLLQKADEAKQAALEAFHPDPMNVTDHLNHHVHLALQGSNSTRRSLKKYTGPCLATNPIDRCWRCNPKWANKRKRLTKCVLGFGRKTTGGKRGKIYVVTDASDSDVVNPKPGTLRYAAVQKRPLWIIFGRSMIIKLTKELMVTSHKTIDARGANVHIAYGAGLSIQFAKNVIIHGLHIHHIMAAGGGMIRDTHNHVGIRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRLDMIKAKPGTFVRRLTRFAGSLNCYVGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8233553 8235573 + Maker00010764 Lcy10g0391 643902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0391 438 PANTHER PECTATE LYASE 18-RELATED 20 435 IPR045032 GO:0030570(InterPro)
Lcy10g0391 438 Pfam Pectate lyase 173 354 IPR002022 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Lcy10g0391 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Lcy10g0391 438 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570(InterPro)
Lcy10g0391 438 SUPERFAMILY Pectin lyase-like 89 428 IPR011050 -
Lcy10g0391 438 Gene3D - 88 431 IPR012334 -
Lcy10g0391 438 SMART amb_all 163 360 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0391 Lcy-Chr10:8233553 Lcy5g2288 Lcy-Chr5:45853840 9.96E-226 dispersed
Lcy10g0387 Lcy-Chr10:8079519 Lcy10g0391 Lcy-Chr10:8233553 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0391 K01728 - csv:101202789 810.831