Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0392 ATGGAGGCGCCAGCTTTGGTACTGAAGAACGAGGAGAATCTCAGAATATGTTGGACGGAAGGTCAAACTCAGGCCATGAGACGTGTCAAGAGACGGCGGAGAGAGCCTGCCACCGCCACCGCCGTCGATCAAACTAATAAGCAGACCGGTCCGCAGCAACAAACCGATCAAGCTCCGACCACCACTACGAAGCGGAGTTCGAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGATTCGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACACAGAAGAAGAAGGGCAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTACTGGGGTGTAACCACCATCACTAATTTCCCAATATCAGAATATGAGAAGGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCATTGAGAAGAAAGAGCAGTGGATTTTCAAGAGGTGTATCAAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTATCTCTATCTTGGAACTTACAGCACTCAAGAGGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCCGAAGCCTCTGCCACCGCCCACCGCCCCGATCGAAGCCCATATGGCGTCGGACCCCCACAAAGAACTCTGCAACTCCAGCTCCATCCCAGCAGAAGACATTTCCCTCTTCAAAAACCATCACTATGATGCCGATTCCCTCCATTCCCTTCAAAAGCAAGAGCTTCTTGAAAGCTGCAGCACCCCTCTTAGTGGCTATGCTAAATCTTCTTCTCCGTCAGCGCTCGACCTCCTCCTTCGATCTTCATTTTTCAAGAAACTGGTTGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGAGAAGAGGCGAAGACTCGAGTGCAGCTCGACAGTGTCTTCGATGAGTTTGGAGACATCTTCTGTGATAGACTTGCAGATGTACCGTTTGTTTGCAGCTCCAACAAAGAGCAGCAAGAAAGTGAGCTTCATTCGTTCTTTAATGGCACATTTCATCGCTTCAAAGCATCCTGA 1173 48.17 MEAPALVLKNEENLRICWTEGQTQAMRRVKRRRREPATATAVDQTNKQTGPQQQTDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWPKPLPPPTAPIEAHMASDPHKELCNSSSIPAEDISLFKNHHYDADSLHSLQKQELLESCSTPLSGYAKSSSPSALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFGDIFCDRLADVPFVCSSNKEQQESELHSFFNGTFHRFKAS 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8243982 8248050 + Maker00010723 Lcy10g0392 643903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0392 390 CDD AP2 166 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Lcy10g0392 390 Pfam AP2 domain 67 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 Pfam AP2 domain 166 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 MobiDBLite consensus disorder prediction 24 71 - -
Lcy10g0392 390 CDD AP2 67 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677(InterPro)
Lcy10g0392 390 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 260 - -
Lcy10g0392 390 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 MobiDBLite consensus disorder prediction 39 67 - -
Lcy10g0392 390 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677(InterPro)
Lcy10g0392 390 SMART rav1_2 167 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0392 390 SMART rav1_2 68 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0392 Lcy-Chr10:8243982 Lcy13g0109 Lcy-Chr13:1031891 3.40E-74 dispersed
Lcy13g2308 Lcy-Chr13:41963891 Lcy10g0392 Lcy-Chr10:8243982 3.45E-111 transposed
Lcy3g1979 Lcy-Chr3:46921561 Lcy10g0392 Lcy-Chr10:8243982 1.32E-62 transposed
Lcy7g0538 Lcy-Chr7:4770610 Lcy10g0392 Lcy-Chr10:8243982 5.18E-91 transposed
Lcy10g0392 Lcy-Chr10:8243982 Lcy10g0904 Lcy-Chr10:28501189 1.33E-06 wgd
Lcy10g0392 Lcy-Chr10:8243982 Lcy11g0532 Lcy-Chr11:12585232 2.38E-46 wgd
Lcy10g0392 Lcy-Chr10:8243982 Lcy4g1350 Lcy-Chr4:32415061 3.73E-76 wgd
Lcy10g0392 Lcy-Chr10:8243982 Lcy6g1105 Lcy-Chr6:12454166 4.40E-72 wgd
Lcy10g0392 Lcy-Chr10:8243982 Lcy8g0777 Lcy-Chr8:28496511 5.29E-41 wgd
Lcy10g0392 Lcy-Chr10:8243982 Lcy9g0587 Lcy-Chr9:19221192 1.46E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18936 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0392 - - - 0.0