Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0428 ATGGGGTTACAGCAACGGCCGGATCAGATCCTCCGGTGGCTGTCCGGTGGGTTCTGGGGCGGCGGCCTCAAGGAAGAAGAAGAGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGTGGCACTGTCGTCGAAGCCGATATCGACGTCGGCCCCGACGGCGGTGATCGATTTCTCGGCGGAGAAACGTGGGAAAGTCCGGCCGGCGAGCTCCTTAAGTAAATCTAAATATGAAGTGGAGAATTTAGGTGAATGGATACCTTGTTCTGTTGGTGCTAATTTCACACTCCATATCATCACTGTCAACACTGGTGAGGGTCGTTTCGAGATATTGTCGTTGTCGGGATCATTCATGCCGAGCGAGAGTGCAGGAACAAGGAGTAGAACCGGTGGAATGAGCGTCTCCTTAGCAAGTCCAGACGGACGCGTCGTTGGTGGCGGAGTTGCTGGTTTGTTAGTAGCTTCTAGTCCTGTTCAGGTGGTAGTAGGAAGCTTTATATCTGGGAACCAGCATGAGCAAAAGCCGAAGAAGCCGAAACAGGACTTCGTATTACCGGTTTCTCTGCTCTTCCAATCTCCAGCACTGAACCGAAGTCATACACGACGACAACGACGACGACATCTTTTCGTGCTGAAACTTGGTCACCATTGGTTCCAGATTTGA 672 52.53 MGLQQRPDQILRWLSGGFWGGGLKEEEEGRPRKYGPDGKLNVVALSSKPISTSAPTAVIDFSAEKRGKVRPASSLSKSKYEVENLGEWIPCSVGANFTLHIITVNTGEGRFEILSLSGSFMPSESAGTRSRTGGMSVSLASPDGRVVGGGVAGLLVASSPVQVVVGSFISGNQHEQKPKKPKQDFVLPVSLLFQSPALNRSHTRRQRRRHLFVLKLGHHWFQI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9334920 9337111 + Maker00010842 Lcy10g0428 643939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0428 223 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 168 IPR005175 -
Lcy10g0428 223 CDD DUF296 108 168 IPR005175 -
Lcy10g0428 223 ProSiteProfiles PPC domain profile profile. 35 190 IPR005175 -
Lcy10g0428 223 Gene3D - 87 184 - -
Lcy10g0428 223 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 108 IPR039605 GO:0003680(InterPro)
Lcy10g0428 223 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0428 Lcy-Chr10:9334920 Lcy6g2037 Lcy-Chr6:43325648 1.32E-91 dispersed
Lcy10g0428 Lcy-Chr10:9334920 Lcy9g0896 Lcy-Chr9:30102688 4.22E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0428 - - - 0.0