Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0444 | ATGTCTGCCGTCGTCGCCAACGACGTCGTAGCCTGGATCCTCCTCGCCCTCGCCATCGCCCTCTCCGGCACCAGCCGCTCCCCTCTCGTCTCCCTTTGGGTCTTCCTCTGCGGCTCTACTTTTGTCCTATCCTGCTTCTTCACTCTCCCGCCGCTCTTCTGTAGGATGTCCTACTGTTGCTCCGAGGGCGAGCCCGTGAGCGAACTCTACATCTGCGCCACTCTTTCCATCGTCCTCGCCGCCAGATTCTTCACCGATTTAATCGGAATCCACGCCCTGTTCGGCGCTTTCGTCATCAGCGTCCTCGTCTCGAAGGACGGCCCACTCGCCGGAGCCCTCGTCGAGAAAGTCGAAGACCTTTTCTCCAGCTTATTCCTTCCTCTGTATTTCGTTTCGAGGGGATTGAAAACCAACATCGCCACAATCAAAGGAGCCCAGTCGTGGGGTCTCCTCGTTATCGTCATCGTCACTGCCTGTTTCAGGAAAATCGTCGGCACCATCGTAGTCGCACTCCTCTGCAAGATGCCATTCCAAGAACCCCTCGCTCTGGGATTCCTGATGAACACCAAAGGCCTCGTCGAACTGATCGTCCTCAACATCGGAAAAGACAGAAAGGGATATCAGATCAAGCAGTCACATCAGCACTATCGACCTTCTAATTCAGGATCCCTAAACTCAAGCTTCACAATTCTGTCGGTTATGGAAGTCTCCATGTTTGCCAACCTCGTGCTTAAACAGGGGAGAAAAACATTGGATATCTGGAAAAACCCAGAAATGCGACCAGCACACGAAGGCAGTTCCGAGTCTGTCGCGGGTCGCCTTGATTCGAAGAGAAATCCAAGCAGAACTCACTGGGAAGAAGAGGGTGGTGACGGAACCCTAGTAGACGCCCATGAGTATGGATGCCCGAGGTTCTTCTTAGAAGACTGA | 930 | 53.66 | MSAVVANDVVAWILLALAIALSGTSRSPLVSLWVFLCGSTFVLSCFFTLPPLFCRMSYCCSEGEPVSELYICATLSIVLAARFFTDLIGIHALFGAFVISVLVSKDGPLAGALVEKVEDLFSSLFLPLYFVSRGLKTNIATIKGAQSWGLLVIVIVTACFRKIVGTIVVALLCKMPFQEPLALGFLMNTKGLVELIVLNIGKDRKGYQIKQSHQHYRPSNSGSLNSSFTILSVMEVSMFANLVLKQGRKTLDIWKNPEMRPAHEGSSESVAGRLDSKRNPSRTHWEEEGGDGTLVDAHEYGCPRFFLED | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 10304632 | 10311587 | - | Maker00015422 | Lcy10g0444 | 643955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0444 | 309 | MobiDBLite | consensus disorder prediction | 256 | 293 | - | - | |
Lcy10g0444 | 309 | Gene3D | - | 1 | 214 | IPR038770 | - | |
Lcy10g0444 | 309 | MobiDBLite | consensus disorder prediction | 275 | 293 | - | - | |
Lcy10g0444 | 309 | PANTHER | CATION/H + ANTIPORTER | 1 | 236 | IPR050794 | GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER) | |
Lcy10g0444 | 309 | Pfam | Sodium/hydrogen exchanger family | 3 | 204 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0444 | Lcy-Chr10:10304632 | Lcy6g0832 | Lcy-Chr6:8361677 | 1.59E-111 | dispersed | |
Lcy4g1935 | Lcy-Chr4:45674099 | Lcy10g0444 | Lcy-Chr10:10304632 | 4.02E-20 | transposed | |
Lcy1g2559 | Lcy-Chr1:46821346 | Lcy10g0444 | Lcy-Chr10:10304632 | 6.25E-30 | wgd | |
Lcy10g0444 | Lcy-Chr10:10304632 | Lcy10g0731 | Lcy-Chr10:22102423 | 2.24E-07 | wgd | |
Lcy10g0444 | Lcy-Chr10:10304632 | Lcy13g1159 | Lcy-Chr13:26874644 | 6.48E-07 | wgd | |
Lcy10g0444 | Lcy-Chr10:10304632 | Lcy2g2307 | Lcy-Chr2:48315027 | 2.97E-12 | wgd | |
Lcy10g0444 | Lcy-Chr10:10304632 | Lcy8g0168 | Lcy-Chr8:3957644 | 2.02E-52 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0444 | K26731 | - | csv:101203169 | 315.464 |