Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0444 ATGTCTGCCGTCGTCGCCAACGACGTCGTAGCCTGGATCCTCCTCGCCCTCGCCATCGCCCTCTCCGGCACCAGCCGCTCCCCTCTCGTCTCCCTTTGGGTCTTCCTCTGCGGCTCTACTTTTGTCCTATCCTGCTTCTTCACTCTCCCGCCGCTCTTCTGTAGGATGTCCTACTGTTGCTCCGAGGGCGAGCCCGTGAGCGAACTCTACATCTGCGCCACTCTTTCCATCGTCCTCGCCGCCAGATTCTTCACCGATTTAATCGGAATCCACGCCCTGTTCGGCGCTTTCGTCATCAGCGTCCTCGTCTCGAAGGACGGCCCACTCGCCGGAGCCCTCGTCGAGAAAGTCGAAGACCTTTTCTCCAGCTTATTCCTTCCTCTGTATTTCGTTTCGAGGGGATTGAAAACCAACATCGCCACAATCAAAGGAGCCCAGTCGTGGGGTCTCCTCGTTATCGTCATCGTCACTGCCTGTTTCAGGAAAATCGTCGGCACCATCGTAGTCGCACTCCTCTGCAAGATGCCATTCCAAGAACCCCTCGCTCTGGGATTCCTGATGAACACCAAAGGCCTCGTCGAACTGATCGTCCTCAACATCGGAAAAGACAGAAAGGGATATCAGATCAAGCAGTCACATCAGCACTATCGACCTTCTAATTCAGGATCCCTAAACTCAAGCTTCACAATTCTGTCGGTTATGGAAGTCTCCATGTTTGCCAACCTCGTGCTTAAACAGGGGAGAAAAACATTGGATATCTGGAAAAACCCAGAAATGCGACCAGCACACGAAGGCAGTTCCGAGTCTGTCGCGGGTCGCCTTGATTCGAAGAGAAATCCAAGCAGAACTCACTGGGAAGAAGAGGGTGGTGACGGAACCCTAGTAGACGCCCATGAGTATGGATGCCCGAGGTTCTTCTTAGAAGACTGA 930 53.66 MSAVVANDVVAWILLALAIALSGTSRSPLVSLWVFLCGSTFVLSCFFTLPPLFCRMSYCCSEGEPVSELYICATLSIVLAARFFTDLIGIHALFGAFVISVLVSKDGPLAGALVEKVEDLFSSLFLPLYFVSRGLKTNIATIKGAQSWGLLVIVIVTACFRKIVGTIVVALLCKMPFQEPLALGFLMNTKGLVELIVLNIGKDRKGYQIKQSHQHYRPSNSGSLNSSFTILSVMEVSMFANLVLKQGRKTLDIWKNPEMRPAHEGSSESVAGRLDSKRNPSRTHWEEEGGDGTLVDAHEYGCPRFFLED 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10304632 10311587 - Maker00015422 Lcy10g0444 643955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0444 309 MobiDBLite consensus disorder prediction 256 293 - -
Lcy10g0444 309 Gene3D - 1 214 IPR038770 -
Lcy10g0444 309 MobiDBLite consensus disorder prediction 275 293 - -
Lcy10g0444 309 PANTHER CATION/H + ANTIPORTER 1 236 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy10g0444 309 Pfam Sodium/hydrogen exchanger family 3 204 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0444 K26731 - - csv:101203169 315.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0444 Lcy-Chr10:10304632 Lcy6g0832 Lcy-Chr6:8361677 1.59E-111 dispersed
Lcy4g1935 Lcy-Chr4:45674099 Lcy10g0444 Lcy-Chr10:10304632 4.02E-20 transposed
Lcy1g2559 Lcy-Chr1:46821346 Lcy10g0444 Lcy-Chr10:10304632 6.25E-30 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy10g0731 Lcy-Chr10:22102423 2.24E-07 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy13g1159 Lcy-Chr13:26874644 6.48E-07 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy2g2307 Lcy-Chr2:48315027 2.97E-12 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy8g0168 Lcy-Chr8:3957644 2.02E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy3g1897 . 47 793 Antiporter Super Family AT3G52080 55.8 2.0e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111