Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0444 ATGTCTGCCGTCGTCGCCAACGACGTCGTAGCCTGGATCCTCCTCGCCCTCGCCATCGCCCTCTCCGGCACCAGCCGCTCCCCTCTCGTCTCCCTTTGGGTCTTCCTCTGCGGCTCTACTTTTGTCCTATCCTGCTTCTTCACTCTCCCGCCGCTCTTCTGTAGGATGTCCTACTGTTGCTCCGAGGGCGAGCCCGTGAGCGAACTCTACATCTGCGCCACTCTTTCCATCGTCCTCGCCGCCAGATTCTTCACCGATTTAATCGGAATCCACGCCCTGTTCGGCGCTTTCGTCATCAGCGTCCTCGTCTCGAAGGACGGCCCACTCGCCGGAGCCCTCGTCGAGAAAGTCGAAGACCTTTTCTCCAGCTTATTCCTTCCTCTGTATTTCGTTTCGAGGGGATTGAAAACCAACATCGCCACAATCAAAGGAGCCCAGTCGTGGGGTCTCCTCGTTATCGTCATCGTCACTGCCTGTTTCAGGAAAATCGTCGGCACCATCGTAGTCGCACTCCTCTGCAAGATGCCATTCCAAGAACCCCTCGCTCTGGGATTCCTGATGAACACCAAAGGCCTCGTCGAACTGATCGTCCTCAACATCGGAAAAGACAGAAAGGGATATCAGATCAAGCAGTCACATCAGCACTATCGACCTTCTAATTCAGGATCCCTAAACTCAAGCTTCACAATTCTGTCGGTTATGGAAGTCTCCATGTTTGCCAACCTCGTGCTTAAACAGGGGAGAAAAACATTGGATATCTGGAAAAACCCAGAAATGCGACCAGCACACGAAGGCAGTTCCGAGTCTGTCGCGGGTCGCCTTGATTCGAAGAGAAATCCAAGCAGAACTCACTGGGAAGAAGAGGGTGGTGACGGAACCCTAGTAGACGCCCATGAGTATGGATGCCCGAGGTTCTTCTTAGAAGACTGA 930 53.66 MSAVVANDVVAWILLALAIALSGTSRSPLVSLWVFLCGSTFVLSCFFTLPPLFCRMSYCCSEGEPVSELYICATLSIVLAARFFTDLIGIHALFGAFVISVLVSKDGPLAGALVEKVEDLFSSLFLPLYFVSRGLKTNIATIKGAQSWGLLVIVIVTACFRKIVGTIVVALLCKMPFQEPLALGFLMNTKGLVELIVLNIGKDRKGYQIKQSHQHYRPSNSGSLNSSFTILSVMEVSMFANLVLKQGRKTLDIWKNPEMRPAHEGSSESVAGRLDSKRNPSRTHWEEEGGDGTLVDAHEYGCPRFFLED 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10304632 10311587 - Maker00015422 Lcy10g0444 643955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0444 309 MobiDBLite consensus disorder prediction 256 293 - -
Lcy10g0444 309 Gene3D - 1 214 IPR038770 -
Lcy10g0444 309 MobiDBLite consensus disorder prediction 275 293 - -
Lcy10g0444 309 PANTHER CATION/H + ANTIPORTER 1 236 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy10g0444 309 Pfam Sodium/hydrogen exchanger family 3 204 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0444 Lcy-Chr10:10304632 Lcy6g0832 Lcy-Chr6:8361677 1.59E-111 dispersed
Lcy4g1935 Lcy-Chr4:45674099 Lcy10g0444 Lcy-Chr10:10304632 4.02E-20 transposed
Lcy1g2559 Lcy-Chr1:46821346 Lcy10g0444 Lcy-Chr10:10304632 6.25E-30 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy10g0731 Lcy-Chr10:22102423 2.24E-07 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy13g1159 Lcy-Chr13:26874644 6.48E-07 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy2g2307 Lcy-Chr2:48315027 2.97E-12 wgd
Lcy10g0444 Lcy-Chr10:10304632 Lcy8g0168 Lcy-Chr8:3957644 2.02E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0444 K26731 - csv:101203169 315.464