Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0467 ATGGACTTGACTCCTGCAATTTCCACCGGCGGAGGAGCTGTGAAATCCCCTGAATTAGACGTTGAAACACCCATCAAAATCCAACCCACCACCAAATCTGCGCCGTTCACCAACGGTGTCCTCAAGCGCCACCATCACACGGCGCCGCAGCCGCCGCCGGTGGTTTACAAAGAATGTCTCAAGAACCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTCATGCCCTCCCCCACCGCCACCGCTGCCGATCCTACTTCCCTCAAATGCGCTGCCTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACCCAATCGCTATCCCGACGACAACCCATGTCATTGAGTACCAGCCCCACCACCGTCACCACCCGCCACCACCGCCGCAGGCGGTGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCTCCGCCGATCTCCTCCTCGTACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCCGGCGGCCTGGCAGAGAACGCTGGCGGCGGCGGCGGATTCCACCACTCGATTCTGACGCCGAGCCCGAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGCAACGACGTCGGAGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGGAAAAAAGACGGCGGCAGGAACATCAACGGCAGCGGCGGCGACGGCGACGGAGATGGCGATGGCGATGGCGACGAGAAAATTAACGGCGGCGGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCCTCTTGA 894 59.28 MDLTPAISTGGGAVKSPELDVETPIKIQPTTKSAPFTNGVLKRHHHTAPQPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSLKCAACGCHRNFHRREPEDPIAIPTTTHVIEYQPHHRHHPPPPPQAVAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLAENAGGGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCNDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDGDGDGDEKINGGGEPHAAANGSSSSS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11126686 11127579 - Maker00015573 Lcy10g0467 643978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0467 297 MobiDBLite consensus disorder prediction 124 154 - -
Lcy10g0467 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Lcy10g0467 297 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Lcy10g0467 297 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Lcy10g0467 297 MobiDBLite consensus disorder prediction 249 297 - -
Lcy10g0467 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 251 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy10g0467 297 Gene3D - 186 254 - -
Lcy10g0467 297 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Lcy10g0467 297 SUPERFAMILY Homeodomain-like 186 254 IPR009057 -
Lcy10g0467 297 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0467 Lcy-Chr10:11126686 Lcy10g2006 Lcy-Chr10:44179367 2.45E-96 dispersed
Lcy10g0467 Lcy-Chr10:11126686 Lcy7g1989 Lcy-Chr7:46615929 2.49E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18938 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0467 - - - 0.0