Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0467 ATGGACTTGACTCCTGCAATTTCCACCGGCGGAGGAGCTGTGAAATCCCCTGAATTAGACGTTGAAACACCCATCAAAATCCAACCCACCACCAAATCTGCGCCGTTCACCAACGGTGTCCTCAAGCGCCACCATCACACGGCGCCGCAGCCGCCGCCGGTGGTTTACAAAGAATGTCTCAAGAACCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTCATGCCCTCCCCCACCGCCACCGCTGCCGATCCTACTTCCCTCAAATGCGCTGCCTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACCCAATCGCTATCCCGACGACAACCCATGTCATTGAGTACCAGCCCCACCACCGTCACCACCCGCCACCACCGCCGCAGGCGGTGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCTCCGCCGATCTCCTCCTCGTACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCCGGCGGCCTGGCAGAGAACGCTGGCGGCGGCGGCGGATTCCACCACTCGATTCTGACGCCGAGCCCGAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGCAACGACGTCGGAGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGGAAAAAAGACGGCGGCAGGAACATCAACGGCAGCGGCGGCGACGGCGACGGAGATGGCGATGGCGATGGCGACGAGAAAATTAACGGCGGCGGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCCTCTTGA 894 59.28 MDLTPAISTGGGAVKSPELDVETPIKIQPTTKSAPFTNGVLKRHHHTAPQPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSLKCAACGCHRNFHRREPEDPIAIPTTTHVIEYQPHHRHHPPPPPQAVAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLAENAGGGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCNDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDGDGDGDEKINGGGEPHAAANGSSSSS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11126686 11127579 - Maker00015573 Lcy10g0467 643978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0467 297 MobiDBLite consensus disorder prediction 124 154 - -
Lcy10g0467 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Lcy10g0467 297 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Lcy10g0467 297 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Lcy10g0467 297 MobiDBLite consensus disorder prediction 249 297 - -
Lcy10g0467 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 251 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy10g0467 297 Gene3D - 186 254 - -
Lcy10g0467 297 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Lcy10g0467 297 SUPERFAMILY Homeodomain-like 186 254 IPR009057 -
Lcy10g0467 297 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0467 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0467 Lcy-Chr10:11126686 Lcy10g2006 Lcy-Chr10:44179367 2.45E-96 dispersed
Lcy10g0467 Lcy-Chr10:11126686 Lcy7g1989 Lcy-Chr7:46615929 2.49E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18938 None None None None Lcy TF