Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0480 ATGGCCACAGAAAACCCCAAATCAGGCGATTGGAGCAGCGCCAACGAAGAAGCCTTCATCTCGTTGGGAAGCGAATACTCCGATCCTCAACAACCCCTCATCCGCGACCGATTCCGCGAAATTTGCCCTCCCGAGTTCTCCAGAAAGCTGATGGCGGAGGTGATTGCGACGTATTTGCTGGTGTTTGTGACGTGCGGGGCGGCGGCATTGAGTGTGAGGGATGAGCGGCAAGTGTCCAAGCTCGGGGCGTCGATGGTCGGCGGGATGATTGTCACGGTGATGATTTACGCCGTTGGACATATCTCCGGCGCCCATATGAACCCGGCGGTCACTTTTGCTTTTGCTGCTGTTCGCCGATTTCCTTGGAAACAGGTTCCACTGTATGCAGCAGCTCAACTAAGTGGAGCAACATCTGCAGCATTTTCACTGCGCATACTATTGGACCCAATTAAAGAAGTAGGTATTACTTCACCTTCTGGACCAGAGTTTCAAGCACTTCTCATGGAGATTGTTGTCTCATTTTGTATGATGTTTGTCACTTCTGCCGTTGCTACCGACACCAAAGCTATTGGAGAGCTTGCAGGCATAGCAGTAGGCTCATCTGTGTGTATCACATCCATCTTTGCTGGGCCTATATCGGGTGGGTCGATGAACCCTGCAAGGTCAATAGGACCTGCGATTGCAAGTTCGCATTATGAAGGGATTTGGGTGTACCTCATCGGACCAGTTGCAGGGACATTGTTGGGGGCATGGTCATATAATTTCATACGTGTGAGTGAAAAACATGGGCATCCACTTTCTCTAGATTGA 810 50.62 MATENPKSGDWSSANEEAFISLGSEYSDPQQPLIRDRFREICPPEFSRKLMAEVIATYLLVFVTCGAAALSVRDERQVSKLGASMVGGMIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWKQVPLYAAAQLSGATSAAFSLRILLDPIKEVGITSPSGPEFQALLMEIVVSFCMMFVTSAVATDTKAIGELAGIAVGSSVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLIGPVAGTLLGAWSYNFIRVSEKHGHPLSLD 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11678482 11681909 - Maker00015531 Lcy10g0480 643991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0480 269 PANTHER AQUAPORIN NIP2-1 42 260 IPR034294 -
Lcy10g0480 269 Pfam Major intrinsic protein 44 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0480 269 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0480 269 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0480 269 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0480 269 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0480 269 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0480 269 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g0480 269 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lcy10g0480 269 Gene3D Glycerol uptake facilitator protein. 25 264 IPR023271 -
Lcy10g0480 269 SUPERFAMILY Aquaporin-like 39 260 IPR023271 -
Lcy10g0480 269 CDD MIP 48 256 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0480 Lcy-Chr10:11678482 Lcy1g0246 Lcy-Chr1:2212111 1.03E-68 dispersed
Lcy10g0480 Lcy-Chr10:11678482 Lcy10g0489 Lcy-Chr10:12294132 3.90E-120 proximal
Lcy10g0480 Lcy-Chr10:11678482 Lcy12g1446 Lcy-Chr12:32924441 1.52E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0480 K09874 - csv:101205456 398.667