Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0480 | ATGGCCACAGAAAACCCCAAATCAGGCGATTGGAGCAGCGCCAACGAAGAAGCCTTCATCTCGTTGGGAAGCGAATACTCCGATCCTCAACAACCCCTCATCCGCGACCGATTCCGCGAAATTTGCCCTCCCGAGTTCTCCAGAAAGCTGATGGCGGAGGTGATTGCGACGTATTTGCTGGTGTTTGTGACGTGCGGGGCGGCGGCATTGAGTGTGAGGGATGAGCGGCAAGTGTCCAAGCTCGGGGCGTCGATGGTCGGCGGGATGATTGTCACGGTGATGATTTACGCCGTTGGACATATCTCCGGCGCCCATATGAACCCGGCGGTCACTTTTGCTTTTGCTGCTGTTCGCCGATTTCCTTGGAAACAGGTTCCACTGTATGCAGCAGCTCAACTAAGTGGAGCAACATCTGCAGCATTTTCACTGCGCATACTATTGGACCCAATTAAAGAAGTAGGTATTACTTCACCTTCTGGACCAGAGTTTCAAGCACTTCTCATGGAGATTGTTGTCTCATTTTGTATGATGTTTGTCACTTCTGCCGTTGCTACCGACACCAAAGCTATTGGAGAGCTTGCAGGCATAGCAGTAGGCTCATCTGTGTGTATCACATCCATCTTTGCTGGGCCTATATCGGGTGGGTCGATGAACCCTGCAAGGTCAATAGGACCTGCGATTGCAAGTTCGCATTATGAAGGGATTTGGGTGTACCTCATCGGACCAGTTGCAGGGACATTGTTGGGGGCATGGTCATATAATTTCATACGTGTGAGTGAAAAACATGGGCATCCACTTTCTCTAGATTGA | 810 | 50.62 | MATENPKSGDWSSANEEAFISLGSEYSDPQQPLIRDRFREICPPEFSRKLMAEVIATYLLVFVTCGAAALSVRDERQVSKLGASMVGGMIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWKQVPLYAAAQLSGATSAAFSLRILLDPIKEVGITSPSGPEFQALLMEIVVSFCMMFVTSAVATDTKAIGELAGIAVGSSVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLIGPVAGTLLGAWSYNFIRVSEKHGHPLSLD | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 11678482 | 11681909 | - | Maker00015531 | Lcy10g0480 | 643991 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0480 | 269 | PANTHER | AQUAPORIN NIP2-1 | 42 | 260 | IPR034294 | - | |
Lcy10g0480 | 269 | Pfam | Major intrinsic protein | 44 | 253 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy10g0480 | 269 | PRINTS | Major intrinsic protein family signature | 236 | 256 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy10g0480 | 269 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy10g0480 | 269 | PRINTS | Major intrinsic protein family signature | 48 | 67 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy10g0480 | 269 | PRINTS | Major intrinsic protein family signature | 168 | 186 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy10g0480 | 269 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy10g0480 | 269 | PRINTS | Major intrinsic protein family signature | 199 | 221 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy10g0480 | 269 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Lcy10g0480 | 269 | Gene3D | Glycerol uptake facilitator protein. | 25 | 264 | IPR023271 | - | |
Lcy10g0480 | 269 | SUPERFAMILY | Aquaporin-like | 39 | 260 | IPR023271 | - | |
Lcy10g0480 | 269 | CDD | MIP | 48 | 256 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0480 | Lcy-Chr10:11678482 | Lcy1g0246 | Lcy-Chr1:2212111 | 1.03E-68 | dispersed | |
Lcy10g0480 | Lcy-Chr10:11678482 | Lcy10g0489 | Lcy-Chr10:12294132 | 3.90E-120 | proximal | |
Lcy10g0480 | Lcy-Chr10:11678482 | Lcy12g1446 | Lcy-Chr12:32924441 | 1.52E-59 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0480 | K09874 | - | csv:101205456 | 398.667 |