Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0543 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTGCCGGAGGCTTCTCCGGCCTCTCCTCCGCCGCCGTCGTCTCCATCTATTGTGACCGCCGGTGACGATAATACCGCTTCTGTTAATCACGACCACCATGATTCTCCTTCTTCAAGTTTATCGCCGGAGGGCAATATAGATGGCGATGGTGAAGATCTGGAGGCCGATAAGGAGACTATGGGAGGTAAATCAGGTGGAACTAAGATGGAAGATGGAGACGGAGATGGAGATAGAGATGGAGATGGAAGCTTGTCGGTCTCGACCGGTGAGTTTACGAATTCGGATACTTCTGCTGTGAGATCGGAGAACTCTAAAGTACTGTCTGGTGAGGAAAGCAATCCGTCGAGTACTACGAAGTCTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCTTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCGCGGCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGTGGGACGATGAGGAACGTTCCTGTGGGTGCAGGGCGTCGTAAGAACAAAAACTCCGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCAGGCTCGAACTGATGTTTCTAATGGCATCCATCATTCTGCACTCAAGCCTAATGGCAACGTATTGGCATTTGGTTCAGACACCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACCTTGCTGATAAAACAAGACAGAATAGCACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACACCATCATTTATAAATAATGAAGAAGGCAAAGCTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCGCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCCTTCTATCCGACTGCACCGTTTTGGGGTTGTACCGTTCCCAGTGCCTGGACCATACCGTGGCTTCCCCAGCCGCCATCTCTGAGCCCCGTTGCCCAAAACCATGCTCCAAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGAGCAAGCAGAGTGATTCTGGTGAAGATGAGCAGCAAAAAGATAACAAAGCTGAGAGATACCTTTGGATACCGAAAACTTTGAGGATCGACGACCCTGGGGAAGCAGCTAAAAGTTCCATATGGGCAACTCTGGGAATCAAGAATGACAAAACTGATTCTGTCAGTGAAGGGCTTTTCAAGGCCTTTCAATCGAAGAAGGGCGACGAAAAGAATCACAAAGCCGAACCTTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCAAGATCAATCAAATTCCACGAAAGCTCGTAA 1551 47.39 MSEPKDPAIKLFGKTIPLPEASPASPPPPSSPSIVTAGDDNTASVNHDHHDSPSSSLSPEGNIDGDGEDLEADKETMGGKSGGTKMEDGDGDGDRDGDGSLSVSTGEFTNSDTSAVRSENSKVLSGEESNPSSTTKSDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHHRQIIVSEALQARTDVSNGIHHSALKPNGNVLAFGSDTPLCESMASILNLADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKAGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSAPVPPPTFYPPGIPMPFYPTAPFWGCTVPSAWTIPWLPQPPSLSPVAQNHAPNSPTLGKHSRDENVSKQSDSGEDEQQKDNKAERYLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKGDEKNHKAEPSPVLQVNPAALSRSIKFHESS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14179367 14181983 - Maker00015418 Lcy10g0543 644054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0543 516 PANTHER CYCLIC DOF FACTOR 2 1 516 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 396 436 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 414 436 - -
Lcy10g0543 516 ProSiteProfiles Zinc finger Dof-type profile. 158 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 102 141 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 72 97 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 142 156 - -
Lcy10g0543 516 Pfam Dof domain, zinc finger 156 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 483 516 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 34 61 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 396 413 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 294 320 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 1 158 - -
Lcy10g0543 516 ProSitePatterns Zinc finger Dof-type signature. 160 196 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 294 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0543 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0543 Lcy-Chr10:14179367 Lcy5g2541 Lcy-Chr5:48173679 5.39E-85 dispersed
Lcy10g0543 Lcy-Chr10:14179367 Lcy2g0570 Lcy-Chr2:4891683 1.18E-115 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT1G29160 52.7 7.7e-43 171.0
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.2e-41 165.6
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT2G34140 53.4 4.4e-43 171.8
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT2G34140 50.3 9.4e-38 154.1
Lcy10g1842 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 67.4 1.4e-37 154.5
Lcy11g0196 . 66 140 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.1e-37 152.9
Lcy2g0570 . 140 491 C2C2-Dof Transcription Factor Family AT3G47500 53.4 2.4e-88 323.6
Lcy10g0543 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.4 6.7e-75 278.9
Lcy11g0196 . 65 140 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.6e-38 157.1
Lcy1g1448 . 54 127 C2C2-Dof Transcription Factor Family AT5G02460 87.8 8.4e-37 152.1
Lcy5g0212 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.7e-37 153.7
Lcy2g0489 . 28 323 C2C2-Dof Transcription Factor Family AT5G60850 54.1 5.8e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008734 0 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18939 None None None None Lcy TF