Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0543 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTGCCGGAGGCTTCTCCGGCCTCTCCTCCGCCGCCGTCGTCTCCATCTATTGTGACCGCCGGTGACGATAATACCGCTTCTGTTAATCACGACCACCATGATTCTCCTTCTTCAAGTTTATCGCCGGAGGGCAATATAGATGGCGATGGTGAAGATCTGGAGGCCGATAAGGAGACTATGGGAGGTAAATCAGGTGGAACTAAGATGGAAGATGGAGACGGAGATGGAGATAGAGATGGAGATGGAAGCTTGTCGGTCTCGACCGGTGAGTTTACGAATTCGGATACTTCTGCTGTGAGATCGGAGAACTCTAAAGTACTGTCTGGTGAGGAAAGCAATCCGTCGAGTACTACGAAGTCTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCTTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCGCGGCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGTGGGACGATGAGGAACGTTCCTGTGGGTGCAGGGCGTCGTAAGAACAAAAACTCCGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCAGGCTCGAACTGATGTTTCTAATGGCATCCATCATTCTGCACTCAAGCCTAATGGCAACGTATTGGCATTTGGTTCAGACACCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACCTTGCTGATAAAACAAGACAGAATAGCACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACACCATCATTTATAAATAATGAAGAAGGCAAAGCTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCGCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCCTTCTATCCGACTGCACCGTTTTGGGGTTGTACCGTTCCCAGTGCCTGGACCATACCGTGGCTTCCCCAGCCGCCATCTCTGAGCCCCGTTGCCCAAAACCATGCTCCAAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGAGCAAGCAGAGTGATTCTGGTGAAGATGAGCAGCAAAAAGATAACAAAGCTGAGAGATACCTTTGGATACCGAAAACTTTGAGGATCGACGACCCTGGGGAAGCAGCTAAAAGTTCCATATGGGCAACTCTGGGAATCAAGAATGACAAAACTGATTCTGTCAGTGAAGGGCTTTTCAAGGCCTTTCAATCGAAGAAGGGCGACGAAAAGAATCACAAAGCCGAACCTTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCAAGATCAATCAAATTCCACGAAAGCTCGTAA 1551 47.39 MSEPKDPAIKLFGKTIPLPEASPASPPPPSSPSIVTAGDDNTASVNHDHHDSPSSSLSPEGNIDGDGEDLEADKETMGGKSGGTKMEDGDGDGDRDGDGSLSVSTGEFTNSDTSAVRSENSKVLSGEESNPSSTTKSDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHHRQIIVSEALQARTDVSNGIHHSALKPNGNVLAFGSDTPLCESMASILNLADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKAGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSAPVPPPTFYPPGIPMPFYPTAPFWGCTVPSAWTIPWLPQPPSLSPVAQNHAPNSPTLGKHSRDENVSKQSDSGEDEQQKDNKAERYLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKGDEKNHKAEPSPVLQVNPAALSRSIKFHESS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14179367 14181983 - Maker00015418 Lcy10g0543 644054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0543 516 PANTHER CYCLIC DOF FACTOR 2 1 516 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 396 436 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 414 436 - -
Lcy10g0543 516 ProSiteProfiles Zinc finger Dof-type profile. 158 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 102 141 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 72 97 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 142 156 - -
Lcy10g0543 516 Pfam Dof domain, zinc finger 156 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 483 516 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 34 61 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 396 413 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 294 320 - -
Lcy10g0543 516 MobiDBLite consensus disorder prediction 1 158 - -
Lcy10g0543 516 ProSitePatterns Zinc finger Dof-type signature. 160 196 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g0543 516 MobiDBLite consensus disorder prediction 294 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0543 Lcy-Chr10:14179367 Lcy5g2541 Lcy-Chr5:48173679 5.39E-85 dispersed
Lcy10g0543 Lcy-Chr10:14179367 Lcy2g0570 Lcy-Chr2:4891683 1.18E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18939 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0543 - - - 0.0