Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0603 | ATGCGCCCAATTTTGATGAAAGGCCATGAACGGCCATTGACGTTCCTCAAGTACAACAGGGATGGCGATCTTCTTTTCTCCTGCGCCAAGGATCATAATCCCACCGTCTGGTTCGCCGACAATGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGCGATGTCTCCAGAGATTCCATGAGGCTCATCACCGGCAGTGCGGATCAGACGGCAAAACTGTGGAATGTACAAACTGGACAGCAACTCTTTTCCTTTAATTTTGACTCACCTGCTAGGGCGGTTGATTTCTCTGTCGGCGATAAGCTTGCAGTGATTACCACCGATCCTTTCATGGAACATCCTTCTGCTATTCATGTTAAACGCATTGCAAAAGACCCCTCGGAACGGATCAATTATAGCTTTAGTATTGTTCTTTTTAAGGAGCTTGTTGCAGCTAACTTGCAAGCTGTTTTACTGCGAAGTAACATGACTTCCTGCTTAGCACCTTTTCAAATTACTGCACAACTTGTTTAG | 528 | 46.4 | MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMEHPSAIHVKRIAKDPSERINYSFSIVLFKELVAANLQAVLLRSNMTSCLAPFQITAQLV | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 16947614 | 16953246 | - | Maker00015616 | Lcy10g0603 | 644114 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0603 | 175 | SMART | WD40_4 | 1 | 38 | IPR001680 | GO:0005515(InterPro) | |
Lcy10g0603 | 175 | SMART | WD40_4 | 41 | 80 | IPR001680 | GO:0005515(InterPro) | |
Lcy10g0603 | 175 | Gene3D | - | 1 | 157 | IPR015943 | GO:0005515(InterPro) | |
Lcy10g0603 | 175 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I | 1 | 137 | - | GO:0002183(PANTHER)|GO:0003723(PANTHER)|GO:0003743(PANTHER)|GO:0071541(PANTHER) | |
Lcy10g0603 | 175 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 48 | 85 | - | - | |
Lcy10g0603 | 175 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 6 | 47 | IPR001680 | GO:0005515(InterPro) | |
Lcy10g0603 | 175 | Pfam | WD domain, G-beta repeat | 42 | 80 | IPR001680 | GO:0005515(InterPro) | |
Lcy10g0603 | 175 | Pfam | WD domain, G-beta repeat | 6 | 37 | IPR001680 | GO:0005515(InterPro) | |
Lcy10g0603 | 175 | SUPERFAMILY | WD40 repeat-like | 4 | 108 | IPR036322 | GO:0005515(InterPro) | |
Lcy10g0603 | 175 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 67 | 81 | IPR019775 | - | |
Lcy10g0603 | 175 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 48 | 89 | IPR001680 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0603 | Lcy-Chr10:16947614 | Lcy8g0147 | Lcy-Chr8:3562167 | 5.88E-92 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0603 | K03246 | - | csv:101211648 | 276.559 |