Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0603 ATGCGCCCAATTTTGATGAAAGGCCATGAACGGCCATTGACGTTCCTCAAGTACAACAGGGATGGCGATCTTCTTTTCTCCTGCGCCAAGGATCATAATCCCACCGTCTGGTTCGCCGACAATGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGCGATGTCTCCAGAGATTCCATGAGGCTCATCACCGGCAGTGCGGATCAGACGGCAAAACTGTGGAATGTACAAACTGGACAGCAACTCTTTTCCTTTAATTTTGACTCACCTGCTAGGGCGGTTGATTTCTCTGTCGGCGATAAGCTTGCAGTGATTACCACCGATCCTTTCATGGAACATCCTTCTGCTATTCATGTTAAACGCATTGCAAAAGACCCCTCGGAACGGATCAATTATAGCTTTAGTATTGTTCTTTTTAAGGAGCTTGTTGCAGCTAACTTGCAAGCTGTTTTACTGCGAAGTAACATGACTTCCTGCTTAGCACCTTTTCAAATTACTGCACAACTTGTTTAG 528 46.4 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMEHPSAIHVKRIAKDPSERINYSFSIVLFKELVAANLQAVLLRSNMTSCLAPFQITAQLV 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16947614 16953246 - Maker00015616 Lcy10g0603 644114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0603 175 SMART WD40_4 1 38 IPR001680 GO:0005515(InterPro)
Lcy10g0603 175 SMART WD40_4 41 80 IPR001680 GO:0005515(InterPro)
Lcy10g0603 175 Gene3D - 1 157 IPR015943 GO:0005515(InterPro)
Lcy10g0603 175 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 137 - GO:0002183(PANTHER)|GO:0003723(PANTHER)|GO:0003743(PANTHER)|GO:0071541(PANTHER)
Lcy10g0603 175 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Lcy10g0603 175 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515(InterPro)
Lcy10g0603 175 Pfam WD domain, G-beta repeat 42 80 IPR001680 GO:0005515(InterPro)
Lcy10g0603 175 Pfam WD domain, G-beta repeat 6 37 IPR001680 GO:0005515(InterPro)
Lcy10g0603 175 SUPERFAMILY WD40 repeat-like 4 108 IPR036322 GO:0005515(InterPro)
Lcy10g0603 175 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Lcy10g0603 175 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0603 Lcy-Chr10:16947614 Lcy8g0147 Lcy-Chr8:3562167 5.88E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0603 K03246 - csv:101211648 276.559