Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0634 | ATGATCGATCCATCCAGCGGTCAAATGGGGATTAAAATTTCAAAGCCGAGTCAGGGGAAGGTGGAAAACCTTAGTCTTCAACACCACCTGATCAATTATCTATCGAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGACCTTGATATGTCATACATCACAGATCATGTATTGGCAATGTCATTTCCTGCAGAACGTATGCGTGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAGGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGTGTGGAGTCATTTCCTTTTGATGATAATCATGTTCCACCTCTACATATGATCAAACTTTTCTGTGAAAATGTCTCTTCATGGCTATCGTCTCACCCGAAGAATATTGCAGTTGTACATTGCATGGCTGGAAAAGGTCGAACGGGATTGATGGTATGTGCCTACTTAGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACGACCAATAATGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAAGTTGCCCAAACCGTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAATCGTTGCAGACAATTTAAGAGAGGTTATGAGAGAAGTACCAGTCCCCGTTACTTTCTGTCTTTTGTTGAAGGGGAAAATGAAGGGAACAAGCCAGAACTCGAACCCCATCTTGTTGTTCAAATGGATACAGAGTGTTCAGCACTATACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTTACTGGAGATATACGCATCATATTCTACGCAAAGATGTTCGGAGGCCGTCTCTTTTATGCTTGCTTTAACACAGCTTTCATTAAGAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAGTTTGTGGCCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCGAAACACTCATTTTCGACTTCATCAGATTGCGAAGATCCTAGTGATGATATGTCTTAA | 1272 | 43.24 | MIDPSSGQMGIKISKPSQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLHMIKLFCENVSSWLSSHPKNIAVVHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVKLPKPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNRCRQFKRGYERSTSPRYFLSFVEGENEGNKPELEPHLVVQMDTECSALYHKTCLDYNFEKPLPLTGDIRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSVCGPSFCLELVFGPANAKHSFSTSSDCEDPSDDMS | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18124880 | 18130006 | + | Maker00015746 | Lcy10g0634 | 644145 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0634 | 423 | Pfam | C2 domain of PTEN tumour-suppressor protein | 324 | 401 | IPR014020 | - | |
Lcy10g0634 | 423 | Gene3D | - | 296 | 405 | - | - | |
Lcy10g0634 | 423 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 57 | 215 | IPR029021 | - | |
Lcy10g0634 | 423 | ProSiteProfiles | C2 tensin-type domain profile. | 249 | 403 | IPR014020 | - | |
Lcy10g0634 | 423 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 157 | 167 | IPR016130 | GO:0016311(InterPro) | |
Lcy10g0634 | 423 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 300 | 402 | IPR035892 | - | |
Lcy10g0634 | 423 | SMART | PTEN_C2_2 | 231 | 402 | IPR014020 | - | |
Lcy10g0634 | 423 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 121 | 178 | - | - | |
Lcy10g0634 | 423 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 49 | 218 | IPR029023 | - | |
Lcy10g0634 | 423 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN | 36 | 218 | - | - | |
Lcy10g0634 | 423 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 137 | 192 | IPR000387 | GO:0016311(InterPro) | |
Lcy10g0634 | 423 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 38 | 404 | IPR051281 | GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER) | |
Lcy10g0634 | 423 | CDD | PTP_PTEN | 59 | 213 | IPR045101 | GO:0016791(InterPro) | |
Lcy10g0634 | 423 | Gene3D | Protein tyrosine phosphatase superfamily | 36 | 217 | IPR029021 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0634 | Lcy-Chr10:18124880 | Lcy1g0966 | Lcy-Chr1:8477718 | 5.30E-46 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0634 | K01110 | - | csv:101212127 | 800.816 |