Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0634 ATGATCGATCCATCCAGCGGTCAAATGGGGATTAAAATTTCAAAGCCGAGTCAGGGGAAGGTGGAAAACCTTAGTCTTCAACACCACCTGATCAATTATCTATCGAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGACCTTGATATGTCATACATCACAGATCATGTATTGGCAATGTCATTTCCTGCAGAACGTATGCGTGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAGGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGTGTGGAGTCATTTCCTTTTGATGATAATCATGTTCCACCTCTACATATGATCAAACTTTTCTGTGAAAATGTCTCTTCATGGCTATCGTCTCACCCGAAGAATATTGCAGTTGTACATTGCATGGCTGGAAAAGGTCGAACGGGATTGATGGTATGTGCCTACTTAGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACGACCAATAATGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAAGTTGCCCAAACCGTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAATCGTTGCAGACAATTTAAGAGAGGTTATGAGAGAAGTACCAGTCCCCGTTACTTTCTGTCTTTTGTTGAAGGGGAAAATGAAGGGAACAAGCCAGAACTCGAACCCCATCTTGTTGTTCAAATGGATACAGAGTGTTCAGCACTATACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTTACTGGAGATATACGCATCATATTCTACGCAAAGATGTTCGGAGGCCGTCTCTTTTATGCTTGCTTTAACACAGCTTTCATTAAGAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAGTTTGTGGCCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCGAAACACTCATTTTCGACTTCATCAGATTGCGAAGATCCTAGTGATGATATGTCTTAA 1272 43.24 MIDPSSGQMGIKISKPSQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLHMIKLFCENVSSWLSSHPKNIAVVHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVKLPKPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNRCRQFKRGYERSTSPRYFLSFVEGENEGNKPELEPHLVVQMDTECSALYHKTCLDYNFEKPLPLTGDIRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSVCGPSFCLELVFGPANAKHSFSTSSDCEDPSDDMS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18124880 18130006 + Maker00015746 Lcy10g0634 644145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0634 423 Pfam C2 domain of PTEN tumour-suppressor protein 324 401 IPR014020 -
Lcy10g0634 423 Gene3D - 296 405 - -
Lcy10g0634 423 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 57 215 IPR029021 -
Lcy10g0634 423 ProSiteProfiles C2 tensin-type domain profile. 249 403 IPR014020 -
Lcy10g0634 423 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311(InterPro)
Lcy10g0634 423 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 300 402 IPR035892 -
Lcy10g0634 423 SMART PTEN_C2_2 231 402 IPR014020 -
Lcy10g0634 423 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 121 178 - -
Lcy10g0634 423 ProSiteProfiles Phosphatase tensin-type domain profile. 49 218 IPR029023 -
Lcy10g0634 423 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 36 218 - -
Lcy10g0634 423 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 137 192 IPR000387 GO:0016311(InterPro)
Lcy10g0634 423 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 38 404 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
Lcy10g0634 423 CDD PTP_PTEN 59 213 IPR045101 GO:0016791(InterPro)
Lcy10g0634 423 Gene3D Protein tyrosine phosphatase superfamily 36 217 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0634 Lcy-Chr10:18124880 Lcy1g0966 Lcy-Chr1:8477718 5.30E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0634 K01110 - csv:101212127 800.816