Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g0639 | ATGGCATCGATGTTTCGTGAGTCGCCACCAACTGCCGTTTCTCACTGCCATCCGCAACCGCTCATGGTCGTCGAAATTGTTCAAATATATGTTCATTTGGCAAGAGGTGATATGGAGAAAATTTTCCCAGCTGCCATTTCAAAGGATGGTCGATCATACAACGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTAAACGAATTGGAGAAGATGGAAGGATAATACAGGAATTTATTGATCTTGGTAACAAAGCGAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTAGGAGATATTCCGGATGAATTCCTTGACCCGATCCAATACACTCTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATTCAAAGACATCTCCTCAGCGATAGTACCGACCCTTTCAACCGATCTCATTTGACTTCGGACATGCTGATACCAAACGTAGAATTGAAAGCAAGAATTGAAGAATTTATCAGGTCACAAGAATTGAAGAGGCAACCCGACGGAGGGGTTGCGATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTAA | 606 | 45.05 | MASMFRESPPTAVSHCHPQPLMVVEIVQIYVHLARGDMEKIFPAAISKDGRSYNEQLFNAAAVVLKRIGEDGRIIQEFIDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNVELKARIEEFIRSQELKRQPDGGVAMQSSKATIQPTSGEMLID | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 18394279 | 18396168 | - | Maker00015674 | Lcy10g0639 | 644150 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g0639 | 201 | PANTHER | UBIQUITINATION FACTOR E4 | 22 | 177 | IPR045132 | GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(InterPro)|GO:0034450(PANTHER)|GO:0036503(InterPro) | |
| Lcy10g0639 | 201 | MobiDBLite | consensus disorder prediction | 176 | 201 | - | - | |
| Lcy10g0639 | 201 | FunFam | Ubiquitin conjugation factor e4 a | 101 | 179 | - | - | |
| Lcy10g0639 | 201 | Pfam | Ubiquitin elongating factor core | 22 | 85 | IPR019474 | GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro) | |
| Lcy10g0639 | 201 | ProSiteProfiles | U-box domain profile. | 101 | 175 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy10g0639 | 201 | Pfam | U-box domain | 102 | 173 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy10g0639 | 201 | SMART | Ubox_2 | 105 | 168 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy10g0639 | 201 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 179 | IPR013083 | - | |
| Lcy10g0639 | 201 | SUPERFAMILY | RING/U-box | 94 | 174 | - | - | |
| Lcy10g0639 | 201 | CDD | RING-Ubox_UBE4A | 104 | 172 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g0639 | K10597 | - | csv:101211398 | 313.538 |