Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0760 ATGGAGAGCAGGGAAGATTTGAAGTCCATATTGCCCTTTCTGCCGCTGGGTCTGAGCTACTCGACTTTATTCTGGCCGTCCCAAGTGGTCGAAACTCTCAAGTCTATGGCGGCAGGGCCTGATCAGAGCGGCGTAAATTCTGGTGAAGCCCTCTTCCTCTGCATCTCTGACATCAGGCAATCTCTCTCTCTCGCCAATCAACGCCTCGCTTCTTCTGCCCGACATGGCTACGCCCTCTTCTTCGACAAGATTATGCCTGAAACAGAATCTATGCAATGGTTTGGTGAGGTTATTCCAGCATTGGGAAATCTGCTTCTCCGGTTACCATCTTTGCTAGAAACTCATTATCAAAATGCTGACCAGATTGCTAGTAAAGGAAGTGGCAAATCCGAAACTGGTCTTCGTTTGTTTGCTTCTCAAGTTGCAGGCACTGTGTATCTCAGTCAGGAGTTGATTGGTGCGCTTCTTGCTTGTGCTTTCTTCTGTTTGTTTCCAGTCATTGATAGACACGTCCAAAATCTTCCAACAATTAACTTTGACTATTTATTTGCTTTTCTCCAAGCTAGAGAAGGATGGATTTGGGAGAAGGATGGATTTGGCACCACCAGAGTTCATAAGCGAAGATTTCTTTCTGGTTGGTTTATTGAATGTATTGTGTGGCCATGGGTGGAAGAAAGTGACAATTCGAATCCCTTGGAGATTGAACGTGTGAAAATGGTTGTAGAAGATGAAAAGACTCCTTGGTTTTGCCCTCTTTTGCCTCCTGTTGATGACTTCCTTGTCAGTTGTTCTTTGGTGGCTTTTGCTTCGGTTCAAGCTGTTTCACAGTTGATTTTGTTTGCTGTTTTCTTGTTCTTTGGCTGTTTTTGTTTTCTGAGAATCTTATGGTGTAATGTAGTGAAAGCAATTTTGTCGGAGCTTTGGTTTGAAAGGAATCAGAGGATCTTTCAAAACAAGCATCTTTCCTCTTTTGATCGGCTTGGATCGACCTGTCTTAAGGCTTCACTATGGATTCTCTATGATGGACGTAGTAAAATGCAGGAGAATAAGATACAATGCATTATACACTATTTCAGAAGGATATGTTCCAGTATGCCGGTGGGCTTTGTCTCATTTGAAAGGAAAGTGCTCCCTTTGGACAAATGCGCCGAACATTTTTGTTGTCCAAACGCCAATTTTTGGATCAACTCCACCATTCCTCTCTGTCAATTTAAGGTTAAAGATTCTGGCCTAATAGAAGATCAAACATTTGGAGCTCTTGAAGTTGATTTTGCTAATGAGTATCTTGGTGGTGGTGCTCTTCATTCTGGCTGCGTGCAGGTCTAA 1326 43.06 MESREDLKSILPFLPLGLSYSTLFWPSQVVETLKSMAAGPDQSGVNSGEALFLCISDIRQSLSLANQRLASSARHGYALFFDKIMPETESMQWFGEVIPALGNLLLRLPSLLETHYQNADQIASKGSGKSETGLRLFASQVAGTVYLSQELIGALLACAFFCLFPVIDRHVQNLPTINFDYLFAFLQAREGWIWEKDGFGTTRVHKRRFLSGWFIECIVWPWVEESDNSNPLEIERVKMVVEDEKTPWFCPLLPPVDDFLVSCSLVAFASVQAVSQLILFAVFLFFGCFCFLRILWCNVVKAILSELWFERNQRIFQNKHLSSFDRLGSTCLKASLWILYDGRSKMQENKIQCIIHYFRRICSSMPVGFVSFERKVLPLDKCAEHFCCPNANFWINSTIPLCQFKVKDSGLIEDQTFGALEVDFANEYLGGGALHSGCVQV 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22771113 22788717 - Maker00031037 Lcy10g0760 644271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0760 441 PANTHER POLY ADP-RIBOSE GLYCOHYDROLASE 32 188 IPR007724 GO:0004649(PANTHER)|GO:0004649(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005975(InterPro)|GO:0006282(InterPro)|GO:0006282(PANTHER)|GO:0009225(PANTHER)|GO:1990966(PANTHER)
Lcy10g0760 441 Pfam Poly (ADP-ribose) glycohydrolase (PARG), helical domain 333 374 IPR048362 -
Lcy10g0760 441 Pfam Poly (ADP-ribose) glycohydrolase (PARG), helical domain 86 185 IPR048362 -
Lcy10g0760 441 Pfam Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold 392 440 IPR046372 GO:0004649(InterPro)|GO:0006282(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0760 K07759 - - csv:101210832 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0760 Lcy-Chr10:22771113 Lcy9g1801 Lcy-Chr9:43124189 7.18E-12 dispersed
Lcy10g0760 Lcy-Chr10:22771113 Lcy13g0853 Lcy-Chr13:14800366 2.60E-10 wgd
Lcy10g0760 Lcy-Chr10:22771113 Lcy2g1574 Lcy-Chr2:21519745 6.07E-09 wgd
Lcy10g0760 Lcy-Chr10:22771113 Lcy3g0620 Lcy-Chr3:23257453 2.41E-10 wgd
Lcy10g0760 Lcy-Chr10:22771113 Lcy5g0893 Lcy-Chr5:15013634 2.97E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01389 . . . . . Lcy10g0760 . . . . . . . Lsi09g01004 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005158 0 1 1 2 1 1 2 2 3 1 2 1 1 1 1 2 2 1 1 1 1 1 1 2 2 2 1 1 2 1 41