Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0778 ATGAAATACAAGTTGGAGAATAAGAAGGCAAGTCACGAGAGAGGCTTCCAAAAGACAGAGTTTAGGATTGCCGTTCAACAGTTGATTACACAATTCAATAGTAAATATGGACTCGATGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCAAAGAGATGATCGCTATCTTGATCTGCCTGCATTAGATACAGTAAAGAGAATGAAGCTATATGCGGAGTCTCTGGCACGATTTCAAGGAGGATCTCCGTACATTTATCCTCTATATGGATTAGGGGAGCTTCCACAGGCATTTGCCCGCCTTAGTGCTGTCTATGGTGGAACATATATGTTAAATAAACCTGAGTGCAAGGTTGAATTTGATGATGAAGGAAAAGTTATTGGTGTCACATCAGAAGGGGAAACTGCCAGGTGCAAAAAGGTTGTCTGCGATCCTTCCTACTTGCCAAACAAGGTCAGGAAGGTCGGTAAGGTTGCTAGGGCCATTGCCATAATGAGCCACCCAATTCCAAACACCAATGATTCCCATTCAGTGCAGATTATTTTACCGCAGAAGCAGTTAGGTCGCAGATCCGACATGTATGTTTTCTGTTGCTCTTACTCTCACAATGTTGCTCCAAGAGGCAAATTTATTGCTTTTGTTACTACGGAAGCTGAGACTGATCATCCCCAGGCGGAACTAAAGCCAGGAATTGACCTGTTGGGAGCTGTTGATGAGATATTTTTTGATACATATGACAGATACGAGCCTGTCAATGAACCATCTCTGGACAATTGCTTTGTATCCATGAGTTACGATGCTACGACACATTTTGAGTCAACTGTGGTTGATGTGCTCAACATGTATACGTTGATAACTGGAAAGGCCGTTGACCTGAGTGTGGATTTGAGTGCTGCTAGTGCTGCAGAAGAATGA 921 42.89 MKYKLENKKASHERGFQKTEFRIAVQQLITQFNSKYGLDDNTIDFIGHALALQRDDRYLDLPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDDEGKVIGVTSEGETARCKKVVCDPSYLPNKVRKVGKVARAIAIMSHPIPNTNDSHSVQIILPQKQLGRRSDMYVFCCSYSHNVAPRGKFIAFVTTEAETDHPQAELKPGIDLLGAVDEIFFDTYDRYEPVNEPSLDNCFVSMSYDATTHFESTVVDVLNMYTLITGKAVDLSVDLSAASAAEE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23569173 23576230 + Maker00031005 Lcy10g0778 644289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0778 306 Pfam GDP dissociation inhibitor 28 295 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Lcy10g0778 306 PRINTS Rab GDI protein signature 210 228 IPR000806 GO:0005093(InterPro)|GO:0015031(InterPro)
Lcy10g0778 306 PRINTS Rab GDI protein signature 142 156 IPR000806 GO:0005093(InterPro)|GO:0015031(InterPro)
Lcy10g0778 306 PRINTS Rab GDI protein signature 243 262 IPR000806 GO:0005093(InterPro)|GO:0015031(InterPro)
Lcy10g0778 306 PRINTS Rab GDI protein signature 264 284 IPR000806 GO:0005093(InterPro)|GO:0015031(InterPro)
Lcy10g0778 306 PRINTS Rab GDI protein signature 44 58 IPR000806 GO:0005093(InterPro)|GO:0015031(InterPro)
Lcy10g0778 306 PRINTS Rab GDI protein signature 185 201 IPR000806 GO:0005093(InterPro)|GO:0015031(InterPro)
Lcy10g0778 306 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 159 249 - -
Lcy10g0778 306 SUPERFAMILY FAD-linked reductases, C-terminal domain 154 251 - -
Lcy10g0778 306 PANTHER RAB GDP-DISSOCIATION INHIBITOR 27 295 IPR018203 GO:0005092(InterPro)|GO:0005093(PANTHER)|GO:0005737(PANTHER)|GO:0007264(InterPro)|GO:0016192(PANTHER)
Lcy10g0778 306 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 86 158 - -
Lcy10g0778 306 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 2 85 - -
Lcy10g0778 306 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 119 249 - -
Lcy10g0778 306 PRINTS Rab GDI/REP protein family signature 92 113 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Lcy10g0778 306 PRINTS Rab GDI/REP protein family signature 74 91 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Lcy10g0778 306 SUPERFAMILY FAD/NAD(P)-binding domain 31 217 IPR036188 -
Lcy10g0778 306 SUPERFAMILY FAD/NAD(P)-binding domain 252 295 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0778 K17255 - - csv:101211328 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0778 Lcy-Chr10:23569173 Lcy4g0085 Lcy-Chr4:1259330 1.53E-165 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01394 . . . Hepe02g2125 . Lcy10g0778 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001825 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 1 2 1 0 5 2 2 67