Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0833 ATGAGGACTGGGAACCGAAAGAGGAAGCTAAGACTAAGCAAGATCTATTCATTTGCTTGTGGAAGAACTTCGTTGAAAGATGAAGATCAATCACGAATCGGGATGCCCGGTTTCTCCCGGGTGGTTTTCTGCAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAACAACTCCATCAGGTCTACAAAGTACACACCTATCACTTTTGTGCCCAAGTCCCTGTTTGAGCAGTTCAGGAGGGTGGCTAATTTTTACTTCTTGATTGCTGGTATACTAGCCTTCACCCCTCTTGCTCCTTATACTGCTGTCAGTGCAATTATCCCTCTTATTGCAGTCATTGTTGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAGGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAAGTTCATCAAGGCAATGGAGTCTTCGATTATACTCAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTGATTTCATCCTGCTATGAGGATGGAATCTGTTATGTGGAAACGATGAACCTAGATGGCGAAACAAATCTAAAGGTAAAGCAAGCACTGGATGCAACTGTATTTGCAAATGAGGATTCTAACTTCCGTGACTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGGAGCATGGACTTTGAAGAGCAACAGTATCCACTTTCTCCACAAAATCTTCTCCTGAGAGACTCCAAACTCCGAAACACAGAATATATATATGGGGCTGTTGTCTTCACTGGTCATGATTCAAAGGTTATTCAAAATTCTATTGATCCGCCATCTAAGAGAAGCAAGGTTGAGAAGAAGATGGATAAAATCATATATCTATTGTTAAGCATTCTATTCTTGCTGGCATTTATTGGATCTATAGTCTTTGGCGTCATGACTAAAGATGATCTGAAAAATGGGAGGATGAAGAGATGGTATCTTAGACCAGATGATTCTACTATTTTCTTTGATCCCAAAAATGCACCCGCTGCTGCTTTTTTTCACTTTCTGTCAGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGCATCTTCATCAATCAAGACCTTCACATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCAGACAAGACTGGAACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCGGGAACAGCTTATGGCAGTGGTATAACTGAAACTGAGAGAGCTATGGAAAGCAGAAATGGTATGCCAATGCTTAATGGCAATGGCAATGGAAATATCTATAAGCACAACGAGGATGCTACAGATACAAATCCCTCTGTCAAAGGTTTTAATTTTAAGGACAGAAGGATTATGAATGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCGACCTGCCATACAGCTATTCCTGATGTGGATGAAGATACGGGCAAGGTTTCATATGAAGCTGAATCACCGGATGAAGCAGCATTTGTAATCGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTATATCAATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCGAAAGGTCGTATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGGAAGAGGATGTCTGTCATAATAAGAGATGAAGAAGGGAAAGTACTATTACTATGCAAAGGTGCTGACAGTGTCATGTTCGAGAGGCTTGCCAAGAATGCTAGCAAATTTGAAGAGAAAACGAAGGACCATATCAATGAGTATGCTGATGCAGGGCTAAGGACCTTGGTACTTGCTTATCGTGAACTTGACGAGGAGGAATACAAGGAATTTGATAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGTCATTGATTGATAAAGTAACAGATCGCATTGAAAGGGATTTAATTCTTCTCGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATATGGGTTTTGACTGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATTATAACTCTGGAGACACCAGAAATTCAAGCCTTAGAAAGGACGGGAGAGAAGGATATGATCACTAAGGCATCAAAAGAAAGTGTCGTCCACAAGATAACTCGGGCAAGGTCTCAGCTCACTGCATCAAGTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAATCGCTTACTTATGCTCTAGAGGATGATGTGAAGAATGCATTCCTTGAGCTTGCAATTGGATGTGCATCTGTTATTTGCTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGCGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAATCGGAATCAGTGGTGCCGAAGGAATGCAGGCATGGAAATCACTTCTTATGCCTTTTATATCCGGGTTATTTACTGCAGTCATGTCCAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTACTACTTGTGCATGGACATTGGTGTTACAGAAGATTATCATCAATGATATGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACAATTTTCTTATATGAGGCATACACTTCATTCTCTGCACAACCTGCGTATAACGACTGGTTTCTGTCACTCTACAATGTTATGTTCTCCGCGCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAGGACGTGTCTGCAAGATATTGCCTTAAGTTTCCTATGCTGTACCAACAAGGCGTGCAGAACGTCCTCTTCAGCTGGGTCCGTATACTCGGCTGGATGTTTAATGGTCTGTGCAGTGCGCTGATCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCATTTAACCCCGATGGGAAAACCGTGGGGAGGGATATTCTCGGAGCGACAATGCTGTCGTGTGTTGTTTGGGTTGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACCTTGTTACAACATATTTTCATCTGGGCTTCAATCTTTATCTGGTACCTTTTCCTGATGATATATGGAGCCATCCCTTCCAGCATTTCAACAAATGCATATCGCGTGTTCCTCGAAACCCTTGCTCCTGCCGGGTCTTATTGGGTTCTGCTAATCTTTGTGGTGATTTCTACTCTCATTCCATTCTTTGTATACTCAGCATTGCAGATGAATTTCTTTCCTATGTACCACGAAAAAATACAGTGGATAAGGCACGATGGTCAGGGTCAGATAGACGATCCCGAGTTTGTCAATATGGTCAGGCAAAGCTCGTTGAGACCGACAACTGTAGGCTTCACCGCTCGTTTGGCAGCCAAAATAAGAAGAGATAAATCATAG 3636 41.83 MRTGNRKRKLRLSKIYSFACGRTSLKDEDQSRIGMPGFSRVVFCNDPDCLEAGMRNYVNNSIRSTKYTPITFVPKSLFEQFRRVANFYFLIAGILAFTPLAPYTAVSAIIPLIAVIVATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGVFDYTQWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATVFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFEEQQYPLSPQNLLLRDSKLRNTEYIYGAVVFTGHDSKVIQNSIDPPSKRSKVEKKMDKIIYLLLSILFLLAFIGSIVFGVMTKDDLKNGRMKRWYLRPDDSTIFFDPKNAPAAAFFHFLSALMLYNYFIPISLYVSIEIVKVLQSIFINQDLHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGITETERAMESRNGMPMLNGNGNGNIYKHNEDATDTNPSVKGFNFKDRRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDEDTGKVSYEAESPDEAAFVIAAREIGFEFYQRTQTSISIRELDPRSGRKVERSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNASKFEEKTKDHINEYADAGLRTLVLAYRELDEEEYKEFDRKFYEAKNSVSAERESLIDKVTDRIERDLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIITLETPEIQALERTGEKDMITKASKESVVHKITRARSQLTASSGSSEAYALIIDGKSLTYALEDDVKNAFLELAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGIGISGAEGMQAWKSLLMPFISGLFTAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTIFLYEAYTSFSAQPAYNDWFLSLYNVMFSALPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWVRILGWMFNGLCSALIIFFFCTSGMQHQAFNPDGKTVGRDILGATMLSCVVWVVNLQMALSVSYFTLLQHIFIWASIFIWYLFLMIYGAIPSSISTNAYRVFLETLAPAGSYWVLLIFVVISTLIPFFVYSALQMNFFPMYHEKIQWIRHDGQGQIDDPEFVNMVRQSSLRPTTVGFTARLAAKIRRDKS 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25521381 25529226 - Maker00020804 Lcy10g0833 644344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0833 1211 FunFam Phospholipid-transporting ATPase 118 288 - -
Lcy10g0833 1211 SUPERFAMILY HAD-like 421 895 IPR036412 -
Lcy10g0833 1211 SFLD Haloacid Dehalogenase 408 933 - -
Lcy10g0833 1211 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1159 IPR023298 -
Lcy10g0833 1211 FunFam Phospholipid-transporting ATPase 703 922 - -
Lcy10g0833 1211 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1160 IPR032630 -
Lcy10g0833 1211 Pfam Cation transport ATPase (P-type) 525 629 - -
Lcy10g0833 1211 NCBIfam phospholipid-translocating P-type ATPase 57 1167 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lcy10g0833 1211 Gene3D - 699 900 IPR023214 -
Lcy10g0833 1211 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 28 1168 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lcy10g0833 1211 Gene3D - 114 287 - -
Lcy10g0833 1211 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Lcy10g0833 1211 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Lcy10g0833 1211 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Lcy10g0833 1211 Gene3D - 552 677 IPR023299 GO:0000166(InterPro)
Lcy10g0833 1211 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Lcy10g0833 1211 SFLD p-type atpase 408 933 IPR044492 -
Lcy10g0833 1211 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 704 IPR023299 GO:0000166(InterPro)
Lcy10g0833 1211 FunFam Phospholipid-transporting ATPase 545 703 - -
Lcy10g0833 1211 CDD P-type_ATPase_APLT_Dnf-like 59 1042 - -
Lcy10g0833 1211 SUPERFAMILY Calcium ATPase, transduction domain A 141 284 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0833 Lcy-Chr10:25521381 Lcy5g2449 Lcy-Chr5:47270391 0 dispersed
Lcy10g0833 Lcy-Chr10:25521381 Lcy7g0397 Lcy-Chr7:3379038 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0833 K01530 - csv:101205800 2259.18