Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0852 ATGACGGACACCACTGACGATATCGCTGAGGAAATCTCCTTCCAGAGCTTTGACGATGACTGTAAATTGCTTGGCAACCTTCTTCAAGATGTCTTGCAGCGCGAAGTTGGCAGCCAATTCATGGAGAAAGTTGAACGCACTCGAGTTCTCGCTCAGAGCGCTTGCAACATGAGGATGGCTGGCATCGAGGATACGGCAGACATGCTCGAGAAGCAGCTTGCGTCGGAGTTATCGCAAATGAATTTAGAGGAAGCCTTCTCTCTGGCCCGTGCATTCAGCCATTCTCTCAATTTGATGGGGATTGCAGAAACCCACCACTGGGTTCGTAAGTCGAGAAATATAGCACCTCTATCAAGATCTTGCGATGAAGTTTTTAGTCAGCTAGTGCAGGGCGGAGTTTCTCCTGACGAGCTTTACGACAGCGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCACATCCAACTCAAATAAATCGTCGTACTTTGCAGTACAAACATCTTCGCATTGCACATCTATTGGACTACAATGACCGACCTGACCTTAGTCCTGAAGATCGGGAAATGCTAATTGATGATCTGGTAAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGACGCCACAAGCCCACACCAGTTGATGAAGCTAGGGCTGGGTTGAACATTGTGGAACAGTCCCTGTGGAAAGCTGTCCCTTACTATTTACGTCGACTCAGCAATGCCTTAAAGAAGCACACTGGAAGATCGCTTCCTTTGACTTGCACACCAATAAAATTTGGGTCTTGGATGGGAGGCGACAGGGATGGAAATCCAAATGTCACAGCAAAATTGTATGGTTTAAAGTATCTTTACATCAACGAGCGGCGAGTGGCGGCGGCAGACGAGCGGCGAGTGGCGGCGGCAGACGAGCGGCGAGAGGCGGACGAGCGGCGAGCGAATGTTAACACGAACACTGTTGCAGCAACTGTGAACGATCGCGAATGGAACGAGCTCGCCGATGAGAAGAAAGAGAGCTCGTCGGAGAAGAAAGAGAGCTCGCCGGAGGGTTGCCGGAAGGAGAGTTCGCCGGTGAAAGCCATGAAACACGTCTCCTATCCTCTGATTGCACACTTGTTCTGCTTCACTCTGGAACTGAATTTCTCACATGTCACAAGAGACGTCTCTCTCTTGTCTAGATGGATGGCTATTGATCTCTACATTCGAGAGCTTGATAGCTTGCAATTTGAACTTTCCATGAACCGGTGCAGTGAGAGATTACACAGTCTCGCACATGAAATTCTTGAAAAAGAAGCTAGATCTGAAAATCGACATGAGACATGGAATCCGTCTTCGAGCAAAAATGGATTGAAGAATCAGGGCCATCAAGCTGCTGCACTTCCAAGACAACTTCCACTTAGGGCTGATCTACCTTCATGCACAGATTGCAATGATGGTCAATCCAGGTATTCTAGAGTAGAATTTCCCAGGACTGATCATACATCATCAAATAATCAGGAAACCTCTGTTCCAAATGAACGTACATCTCTATCAAATGGAAATTCACCTAGTGCAAGTGCACTTCAGTCCAATTCTGCACCTCGTGCTGCATCTTTCAACTCTAGTCAACTCCTTGCTCAGAGAAAACTGTTTGCAGAATCTCAGATGGGGAGGTCCAGTTTAAAGAAGCTTTTAGAACCCAGGCTCCCTCTACGTCCTGGAATTGCACCCTACCGTGTTGTGCTTGGTAGTGTAAAAGACAAGCTTGTGAAAACACGAAGAAGGCTGGAGCTGCTTCTTGAGGGTCTTCCTTGTGAACAAGATCCTTCGGATTACTATGAGACTGCAGATCAACTCTTGGAGCCGCTGCTTCTATGCTATGAGTCTCTGCAATCATGTGGATCTGTGGTGCTTGCTGATGGCCGGTTAGTTGATCTGATTAGACGAGTTGTTACATTTGGTATGGTATTAATGAAGCTGGACTTACGTCAGGAATCTGGTAGACATGCTGAAACTCTGGACGCCATTACAACTTATTTGGACATGGGAACATATAGTGACTGGGATGAAGAAAGGAGGTTGGAATTTCTGACAAGAGAGCTAAAAGGGAAGCGACCCCTGGTTCCTCCAACTATTGAGGTTCCTTCTGATGTTCAAGAAGTTTTGGACACCTTTCGTGTTGCTGCTGAGCTAGGGAGTGAATCACTTGGTGCCTATGTGATCTCTATGGCCTCAAATGCTAGCGATGTACTCGCAGTGGAACTTCTGCAGAAAGATGCACGACTTGCTGTTAGTGGCGAGTTAGGACGACCATGTCCTGGTGGAACGTTGCGGGTGGTTCCTCTGTTTGAAACTGTGGACGACTTGAGGAAAGCAGGTTCATCAATCAGGAAATTATTATCTATTGATTGGTATCGAGAACACATCATAAAGAACCATAATGGGCTACAAGAGGTGATGGTAGGTTATTCTGATTCTGGGAAAGATGCTGGGCGCTTCACTGCTGCATGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCATGCAACGAGTATGGTATTAAAGTTACCCTATTCCATGGGCGTGGAGGGAGCATTGGCCGTGGGGGTGGCCCAACTTATCTGGCCATTCAATCCCAGCCTCCAGGTTCGGTAATGGGTACTCTACGATCAACCGAGCAAGGGGAAATGGTGCAGGCCAAGTTCGGGTTGCCTCAGACTGCTGTTAGACAGCTAGAGATATATACGACAGCCGTACTTCTTTCAACTCTACGTCCACCTCTTCCACCTCGAGAAACAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATCAGCTGTCAGAATTACCGGAGCATGGTATACGAAAATCCAGAATTCATTTCTTACTTCAATGAGGCCACTCCTCAAGCGGAGCTTGGCTTCCTTAACATTGGAAGCCGCCCAACAAGAAGAAAGACCTCAGTTGGGATCGGACATCTTCGAGCTATACCATGGGTTTTTGCTTGGACACAAACTAGATCTGTTCTTCCAGCCTGGCTTGGGGTTGGGGCAGGCCTAAAGGGTGTGTGTGAAAAGGGTCACACTGAGGACTTGAAATCAATGTACAAAGAATGGCCTTTCTTCCAGAGTACCCTGGACCTTATAGAGATGGTTTTAGGGAAAGCTGACACTCACATTGCAAAGCATTATGACGAAGTCCTTGTCTCGGAGAGCCGACGCAAAATCGGATCTGTACTGAGGGAGGAACTGGTAGAGACTGAGAAATATGTTTTGGTAGTTAGCAGGCACGAGAAACTATCTGAGAACAATCGGAGTTTGAGGAGGCTGATCGAAAGCAGACTCCATTTTCTTAATCCTCTGAATCTGCTGCAAGTGGAGATATTAAAGAGGCTGAGATGTGATGCAGACAACAACAAACTAAGAGATGCATTGCTTATTACAATCAACGGAATCGCAGCTGGAATGAGGAACACAGGCTAA 3468 46.86 MTDTTDDIAEEISFQSFDDDCKLLGNLLQDVLQREVGSQFMEKVERTRVLAQSACNMRMAGIEDTADMLEKQLASELSQMNLEEAFSLARAFSHSLNLMGIAETHHWVRKSRNIAPLSRSCDEVFSQLVQGGVSPDELYDSVCKQEVEIVLTAHPTQINRRTLQYKHLRIAHLLDYNDRPDLSPEDREMLIDDLVREITSIWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPYYLRRLSNALKKHTGRSLPLTCTPIKFGSWMGGDRDGNPNVTAKLYGLKYLYINERRVAAADERRVAAADERREADERRANVNTNTVAATVNDREWNELADEKKESSSEKKESSPEGCRKESSPVKAMKHVSYPLIAHLFCFTLELNFSHVTRDVSLLSRWMAIDLYIRELDSLQFELSMNRCSERLHSLAHEILEKEARSENRHETWNPSSSKNGLKNQGHQAAALPRQLPLRADLPSCTDCNDGQSRYSRVEFPRTDHTSSNNQETSVPNERTSLSNGNSPSASALQSNSAPRAASFNSSQLLAQRKLFAESQMGRSSLKKLLEPRLPLRPGIAPYRVVLGSVKDKLVKTRRRLELLLEGLPCEQDPSDYYETADQLLEPLLLCYESLQSCGSVVLADGRLVDLIRRVVTFGMVLMKLDLRQESGRHAETLDAITTYLDMGTYSDWDEERRLEFLTRELKGKRPLVPPTIEVPSDVQEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVDDLRKAGSSIRKLLSIDWYREHIIKNHNGLQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLSTLRPPLPPRETKWRNLMEEISKISCQNYRSMVYENPEFISYFNEATPQAELGFLNIGSRPTRRKTSVGIGHLRAIPWVFAWTQTRSVLPAWLGVGAGLKGVCEKGHTEDLKSMYKEWPFFQSTLDLIEMVLGKADTHIAKHYDEVLVSESRRKIGSVLREELVETEKYVLVVSRHEKLSENNRSLRRLIESRLHFLNPLNLLQVEILKRLRCDADNNKLRDALLITINGIAAGMRNTG 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26331815 26348143 - Maker00020727 Lcy10g0852 644363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0852 1155 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 280 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0008964(PANTHER)|GO:0015977(InterPro)
Lcy10g0852 1155 Gene3D Phosphoenolpyruvate/pyruvate domain 395 468 - -
Lcy10g0852 1155 Gene3D Phosphoenolpyruvate/pyruvate domain 520 649 - -
Lcy10g0852 1155 FunFam Phosphoenolpyruvate carboxylase 1 530 650 - -
Lcy10g0852 1155 MobiDBLite consensus disorder prediction 487 528 - -
Lcy10g0852 1155 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 289 IPR015813 GO:0003824(InterPro)
Lcy10g0852 1155 MobiDBLite consensus disorder prediction 329 358 - -
Lcy10g0852 1155 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1155 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lcy10g0852 1155 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 813 825 IPR033129 -
Lcy10g0852 1155 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lcy10g0852 1155 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lcy10g0852 1155 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lcy10g0852 1155 Pfam Phosphoenolpyruvate carboxylase 563 1155 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lcy10g0852 1155 Pfam Phosphoenolpyruvate carboxylase 19 325 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lcy10g0852 1155 MobiDBLite consensus disorder prediction 327 358 - -
Lcy10g0852 1155 MobiDBLite consensus disorder prediction 432 459 - -
Lcy10g0852 1155 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 384 1155 IPR015813 GO:0003824(InterPro)
Lcy10g0852 1155 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Lcy10g0852 1155 MobiDBLite consensus disorder prediction 491 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0852 K01595 - - csv:101216256 1382.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0852 Lcy-Chr10:26331815 Lcy9g1350 Lcy-Chr9:38377265 3.70E-213 dispersed
Lcy10g0852 Lcy-Chr10:26331815 Lcy4g0703 Lcy-Chr4:8496828 8.84E-214 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35