Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0854 ATGGAGAAGAGCCCGGTGGAGAAAACGGCGGCACCGGTGCCGAGAGTTGCGGTGGTGGTTTACATCCTGAAGGGAAAGTCTGTGCTATTGGGTCAAAGACTGTCTTCCGCCGGCGACTCCAGCCACTGCACCTTCGCACTTCCCGGCGGCCACCTCGAGTTCGGCGAGGCGTTTGATGAATGTGCTGTGAGAGAGGTGAAGGAAGAGACGGGCTTAGACATTGAGAAAACAGAGTTTCTAACTGTTACAAACAACCCTTTTCTCGACGATCCAAAGCCTTCCCATTATGTCACCATTTTTATGCGCGCAGTTCTGTCGGATCCTCTGCAACTGCCCCAAAACCTGGAGCCGAGCAAGTGCGCTGGATGGGACTGGTACGATTGGGATAATCTTCCAAATCCTCTCTTTTGGCCTCTCGAGAAAATGGTGAAGACTGGCTTTAATCCATTTCCTGTTTGA 459 52.07 MEKSPVEKTAAPVPRVAVVVYILKGKSVLLGQRLSSAGDSSHCTFALPGGHLEFGEAFDECAVREVKEETGLDIEKTEFLTVTNNPFLDDPKPSHYVTIFMRAVLSDPLQLPQNLEPSKCAGWDWYDWDNLPNPLFWPLEKMVKTGFNPFPV 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26497073 26498030 - Maker00020772 Lcy10g0854 644365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0854 152 ProSiteProfiles Nudix hydrolase domain profile. 13 149 IPR000086 -
Lcy10g0854 152 SUPERFAMILY Nudix 10 142 IPR015797 -
Lcy10g0854 152 Pfam NUDIX domain 14 138 IPR000086 -
Lcy10g0854 152 CDD Nudix_Hydrolase_19 24 141 - -
Lcy10g0854 152 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 7 151 - -
Lcy10g0854 152 FunFam Nudix hydrolase 1 8 151 - -
Lcy10g0854 152 PANTHER 8-OXO-DGTP DIPHOSPHATES NUDT15 7 151 - GO:0005829(PANTHER)|GO:0006203(PANTHER)|GO:0035539(PANTHER)
Lcy10g0854 152 PRINTS NUDIX hydrolase family signature 59 74 IPR020476 -
Lcy10g0854 152 PRINTS NUDIX hydrolase family signature 45 59 IPR020476 -
Lcy10g0854 152 ProSitePatterns Nudix box signature. 50 71 IPR020084 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0854 K03574 - - csv:101216020 272.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0854 Lcy-Chr10:26497073 Lcy8g1033 Lcy-Chr8:35868405 1.27E-62 dispersed
Lcy1g1959 Lcy-Chr1:23605637 Lcy10g0854 Lcy-Chr10:26497073 6.73E-47 wgd
Lcy10g0854 Lcy-Chr10:26497073 Lcy7g0405 Lcy-Chr7:3460095 1.96E-68 wgd
Lcy10g0854 Lcy-Chr10:26497073 Lcy8g0792 Lcy-Chr8:28917430 5.86E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g242 Blo01g00473 . Bda01g02105 . . . . . . Cmo18g01076 . Cma18g01054 . Car18g00978 Sed11g1579 Cpe09g00263 Cpe01g01752 Bhi07g01384 Tan04g0915 Cmetu10g1268 Lac13g0445 . . . Cla05g02342 Cam05g2515 Cec05g2541 Cco05g2582 Clacu05g2509 Cmu05g2371 Cre05g2488 . Cone19ag0867 . . Lsi04g00302 Csa05g02070 Chy10g01105 Cme10g00305 . . . . . Bpe02g02294 Bma01g00147 . . . . . . . . . . Bhi12g00827 . . . . . Lcy10g0854 Cla01g00566 Cam01g0589 Cec01g0581 Cco01g0605 Clacu01g0584 Cmu01g0555 Cre09g1952 Lsi09g00614 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001415 3 2 2 2 2 3 2 3 3 2 3 3 2 2 2 2 3 2 2 3 2 3 1 2 3 3 3 1 4 1 71