Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0875 ATGTGGTGGAGAGTCAGCGGAAGTGGTTTCAATGGTCATCCGGTGATTGGTTTTCGGGTTGTTGTTTGTCGTCGCCTCAATCTGTTGCTGGACGACTTGAGGGAGCAAATTTTGTGCTGCAGCAAATATGTGAGTAAAACTGCCACGTCACAGCTCGTTAGCCAATTTAATGAACCGAATTCTATTGTAGCTACTCGAAGGAAACGACCCCAACATTCATCCATTTCATTAGTATCTATCCTCTATACTATCCCTAATCGGCTACCGGGCGTTTGTGCCACAATGCCGTTTCGTAGGCCAAGAGATATGGCTTCAGATACTGGTTCGAGGGCGAGTTCAGCTGCCGATTCGTACATTGGAAGCTTGATAAGTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTACTGTACAACATCAACACCGAAGAGTCGAGTATTGGACTTAGAAACGTGAGATCATTTGGAACAGAAGGAAGAAAGAAGGATGGTCCCCAAGTCCCTCCAAGCGATAAAGTTTTTGAGTACATCTTATTCCGTGGAAGTGATATCAAGGATTTGCAGGTTAAATCTTCTCCACCCGTTCAGCCGGCAGCACCTATAAATAATGATCCAGCAATTATTCAATCTCATTATCCCCACTCAGTTTCCACATCTACCAGCATGCATTCTGCTGTCAGTGGGTCATTACCTGATCATACTTCCCACACAGCATTTGGATTTCCTCAGTCTAATTTTCAAGGTGGTTTGCCTCCGTATCAACCTGGAGGCAACTTGGGGTCATGGGGAGCTTCTCCTCCACCTCCTCCAAGTGCGAATGGCAGTGGACTTGCGATGCCCATGTATTGGCAAGGGTATTATGGCCCACCAAATGGGCTTCCTCAGTTACACCAGCAGTCGATAATACGACCTCCTCCTGGTCTGCAAATACCTTCATCTCTGCAACAGTCAATGCAATATCCTAACATTAATGCATCTTTACCCACTGGAGCTTCAACACAACCAGAAGTTCCATCTCCCTTGCTCTCTGCTAGTAATAGTTCTCCTAACTTGACCTCCACTGCTCTGCCCCCATCAACTTTTTCAACAGCTTTGCCTATGTTTCCTTTTACTTCTATTTCTGAAACGTTACCAAGTTCAGTTGCTAATAAGACATCTGTTCCTACCCTTCCTGGAGCCCCAGTTAGTGTTAGTTTGCCAGTAGGCCCAATACTGTCTTCATTTTCTACTTCAAGTGCAGATGTTAGTTCTGCCATACCACCAATCACTAATGAACCTAATGCAGTTTCTGGTCCCTCATTACTGTATCAAACTGTGTCCCAGTCAACTTCATCTGTTGTTGGAACTTCTAACTCTCGCACAGAATCTTCTGTACCTTCTCTAGTTACCCCAGGGCAGCTGTTGCAGTCTGGGCCCACTGCTGTGGTTTCATCTCAATCCTCACATGTAGTGCATAAGGATGTGGAAGTGGTCCAGTCATCATCGTTAGAACCTTCTAAGCCAGTGACAACAGAGGTTCAGCCACCAATACTACCACTACCTGTACCGTCAAGGCCTGTCCAGAAGGCAAATGGTGCTCATTTTCAGGCTCGCCATTTTTACAGAGGACGAGGAAGAGGATCTGGGACGGGAGGGAGGGTCATATCTGGTCAGTTGGGAGATGCTCCCTTCGATCTAAGGGGATTGGGTGTTGGTAACATGAGACACTGGATAGGGAGGGAATGCAAGGCTATGATGGAGGAGGTTAAGTTGTTTCCTGCTTTTGAGGAGAAAGGCAGGGAGAAGGGCAAGGAGAAGGGCAAAGTTCTATGGCAGGCTTGCTTCTACGTTAGTTCCCGTCCTGTGACCAAATTTACCGAAGATTTTGATTTTATAGCTATGAACGAGAAATTCAATAAGGATGAAGTGTGGGGAGATCTAGGTAGAAGTAATAAATCTCATCTCAAGGATAAGGATGGGGATGGAAAGGTGAGTGATGAGGACGATGCTGAAGAAGAAGATGAGGGTGAACTCTCACAGGCTGGGATTAAGCCCTTGTATAACAAGGATGACTTCTTTGATTCACTCTCTTATAATGCTGTTGATCATGATGCTCAAAATGGGCGGACTAGATATTCAGAGCAAGTAAAAATAGACACAGAGACTTTTGGTGATTTTTCGAGGTATCGAGGTGGCCGAGGTGGTCGAGGTCCTGGACGTGGAGGTCGTTTCCGTGGAGGTTACCAGGGAAGAGGATATGGTTATTATAATGGGAGGGGTCGGGGGCGATCATCATATAATCGTATATAG 2289 45.87 MWWRVSGSGFNGHPVIGFRVVVCRRLNLLLDDLREQILCCSKYVSKTATSQLVSQFNEPNSIVATRRKRPQHSSISLVSILYTIPNRLPGVCATMPFRRPRDMASDTGSRASSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQPAAPINNDPAIIQSHYPHSVSTSTSMHSAVSGSLPDHTSHTAFGFPQSNFQGGLPPYQPGGNLGSWGASPPPPPSANGSGLAMPMYWQGYYGPPNGLPQLHQQSIIRPPPGLQIPSSLQQSMQYPNINASLPTGASTQPEVPSPLLSASNSSPNLTSTALPPSTFSTALPMFPFTSISETLPSSVANKTSVPTLPGAPVSVSLPVGPILSSFSTSSADVSSAIPPITNEPNAVSGPSLLYQTVSQSTSSVVGTSNSRTESSVPSLVTPGQLLQSGPTAVVSSQSSHVVHKDVEVVQSSSLEPSKPVTTEVQPPILPLPVPSRPVQKANGAHFQARHFYRGRGRGSGTGGRVISGQLGDAPFDLRGLGVGNMRHWIGRECKAMMEEVKLFPAFEEKGREKGKEKGKVLWQACFYVSSRPVTKFTEDFDFIAMNEKFNKDEVWGDLGRSNKSHLKDKDGDGKVSDEDDAEEEDEGELSQAGIKPLYNKDDFFDSLSYNAVDHDAQNGRTRYSEQVKIDTETFGDFSRYRGGRGGRGPGRGGRFRGGYQGRGYGYYNGRGRGRSSYNRI 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27029981 27038843 + Maker00020716 Lcy10g0875 644386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0875 762 MobiDBLite consensus disorder prediction 642 656 - -
Lcy10g0875 762 MobiDBLite consensus disorder prediction 323 355 - -
Lcy10g0875 762 SMART LSM14_2 112 212 IPR025609 -
Lcy10g0875 762 FunFam Trailer hitch, isoform C 112 194 - -
Lcy10g0875 762 Gene3D - 108 194 - -
Lcy10g0875 762 MobiDBLite consensus disorder prediction 492 521 - -
Lcy10g0875 762 ProSiteProfiles DFDF domain profile. 610 646 IPR025762 -
Lcy10g0875 762 PANTHER SCD6 PROTEIN-RELATED 115 544 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
Lcy10g0875 762 MobiDBLite consensus disorder prediction 642 674 - -
Lcy10g0875 762 Pfam Scd6-like Sm domain 118 191 IPR025609 -
Lcy10g0875 762 ProSiteProfiles Sm domain profile. 110 193 IPR047575 GO:0003723(InterPro)
Lcy10g0875 762 MobiDBLite consensus disorder prediction 721 740 - -
Lcy10g0875 762 SUPERFAMILY Sm-like ribonucleoproteins 117 194 IPR010920 -
Lcy10g0875 762 Pfam FDF domain 617 719 IPR019050 -
Lcy10g0875 762 ProSiteProfiles FFD box profile. 678 693 IPR025761 -
Lcy10g0875 762 MobiDBLite consensus disorder prediction 218 273 - -
Lcy10g0875 762 SMART FDF_2 616 720 IPR019050 -
Lcy10g0875 762 CDD LSm14_N 115 189 IPR025609 -
Lcy10g0875 762 ProSiteProfiles TFG box profile. 700 720 IPR025768 -
Lcy10g0875 762 MobiDBLite consensus disorder prediction 218 251 - -
Lcy10g0875 762 MobiDBLite consensus disorder prediction 446 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0875 K18749 - - csv:101215778 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0875 Lcy-Chr10:27029981 Lcy9g1524 Lcy-Chr9:40318110 1.55E-30 dispersed
Lcy1g2406 Lcy-Chr1:39914954 Lcy10g0875 Lcy-Chr10:27029981 4.48E-10 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy10g0947 Lcy-Chr10:30166350 1.16E-06 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy11g0888 Lcy-Chr11:26342999 3.05E-08 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy11g0455 Lcy-Chr11:9515265 1.07E-08 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy12g1101 Lcy-Chr12:20221939 6.79E-08 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy12g1142 Lcy-Chr12:21746983 4.66E-06 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy13g1092 Lcy-Chr13:24618184 7.56E-10 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy2g2010 Lcy-Chr2:38027470 4.53E-13 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy2g1767 Lcy-Chr2:28365619 1.71E-09 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy2g1505 Lcy-Chr2:19095189 6.90E-07 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy3g0596 Lcy-Chr3:22543014 2.10E-07 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy5g1450 Lcy-Chr5:34765502 3.65E-07 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy7g0408 Lcy-Chr7:3503686 6.86E-176 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy7g1703 Lcy-Chr7:34608064 2.55E-10 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy7g1854 Lcy-Chr7:41960940 2.19E-08 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy8g0434 Lcy-Chr8:13744778 3.77E-09 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy9g0574 Lcy-Chr9:18534445 1.37E-12 wgd
Lcy10g0875 Lcy-Chr10:27029981 Lcy9g0883 Lcy-Chr9:29569982 3.48E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66