Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0877 ATGGTGAACAGATTGGGTGTTCTTGTTGCTGTTTCAATTGCAGCTTATGCTATTAGGCAGCTCACAATCAGATCATGGAGGCTATTAATCTTGCCTACCAACTGTTCAGAAAATGGAGGAGCTACAGAGAATAAAGGCTTAGAAGAAGAAGAACAGAAAGCTAATTCAATAAATGATGCAACTAGTCAAGTTAATGGTAGAATCTCTGATCTTGAAGGTGGAGATAATAGCTCAGCTGAACTTAGAGAACTTCCACCGCGAGAATCCGAAAACCGGTTGCTTGATGACAATGAGAAAGCAGAAGGCAAAGAGCCTGAAATCCAGATGGAAAACAGTAGGATTGAATTGGACAGGTTGCTGAAACTAGTGATGGAATTGGAGGAGAGGAAAGTGAAACTTGAACGTGAATTGCTCATGTGCAACGGAACAAAGGGCGATAAAACCGACGTCATGGAGTTACGAAAGACACTTGAATCCAAGAATGAAGATATCAGTATGCTTAATATCACAATCAGCTCTCTGCAGGCTGAGAGGAAGAAGCTACAAGAGGAGATAGTGAAGGGAGCATTGATGAGGGAGGAACTAGAGAAGGCTAGGAGCAAGATTAAGGAGCTGCAGAGGCAGATTCAGCTTGATGCAAACCAAACAAAAGAACATTTATTATCACTCAAACAACGAGTTTCCGCTTTGCAGGCAAAAGAGGAAGAGGCTGTCAAGAAAGAAGCAGAACTTTATAAGAGGCTGAAAGCGGCGAAGGATTTCGAGGTAGAACTCGGGGAGCTTAAGCGGAAAAATCGAGAGCTTCTGCACGAAAATCAGGAACTAGCTTCTAAGCTAGATGTCATGAAGGCTAGAATCACAGATCTCACTAACATGACAGAGAGTGAAACAATCACTAAGGAAAGAGAGGAGGCTCAAAAGTTGAGGAGTGAAAATGAGAATCTGATAAAGCAACTTGAAGGGCTTCAGATGAATAGGTTCAGCGAAGTTGAAGAGTTAGTGTACCTACGGTGGATCAATGCTTGTTTGAGGTATGAGCTTCGAGACAACGACAACGAGACATCGGTGGGCGAATCCGCTCGTTATCTCAATAAGAGTTTAAGTCCAAAGTCAAAAGAGAAGGCAAAACAACTAATGTTAGAGTATGCAGAATTGGAGTTTGGACAAGCAGAAACAGATCATGAAAGCAACTTTTCTCATCCATTTTCTTCTGGGATTGAAGATTTTGACAATACTTCAATTGATAGTTCAAGGAGCAGAACTAATAGTTTCAGTGAGAAGCCTAATTCAAATCTGAGTTTGAAGAAATTGAGCAGAAACAAAAGTGGTCCGAGTGCTGTTTCGAGCCACAGATGGAAGGATCCTTTAGAAGCCGAGATGGCTCTGAGTGCTGCTAAAACTGTAACTCTCTCAGAAGTCAGATTGCAAGTATCTTCAAGAAACTCTGTCAATTCAGTAGCAACATCATTCCAACTAATGTCGAAATCAGTCGAGGAAAGTCGAAAACTGAAATATTCAGCTTCCAAACAGCATCATAAGTTGGCCTTAGGAAGTGAGAAGCAAATCAAGGAAAAGGCTGAGAAAGAAACAGCAAAAGACTCCGGTGTCGTTTCGAGTCCGAAATTAGATCATGATGAAGGCACTAGCATGAGAAAGAAGCCTGCAACTTTCCCTCATAAACTTGCTCAAATGAAGGTGAAAAGAACTTCTTGTGATCCATATAGCCAATATAATGAGTCTAAAAATATAATTCTCAATCCAACTTCTTCGAGCGATCCGAGAAACCGAGTGAAAGCTGATATGGAAACTCAAGGAGACTTGGTTATGCCTTTGCCAATGGAAGTTAGAGAAGCTTCTTTCTCCAACATGGAAGATGTTCTCTCCTTCATACTATGGCTTGATGAAATACTATCTTCCTCGGTCGATGAGAAGGAGATTCTCGAGCACTTCGATTGGCCCGAGGGGAAAACAGATGCATTGAGAGAAGCAGCCTTTGGATATCAGAACCTGATGAAACTAGGAGCACAAGTCTCTTGTTTTGTTGACAGTCCCAAACTCACTTGTGAAGTTGCTTTGAACAAAATGCACTCCTTGCAAGATAAGGTGGAGCAGGAAGTCTATGCAGTCTTACGTACAAGAGACACGGCGATTTCGCGATACGAGGAACTCGGAATTCCCATTGATTGGCTGTTGGATTCTGGAGTTGTTGGCATGATGAAGATATCATGTGTAGAATTGGCAAGGAAGTACATGAAGCGCATAGTAAGTGAATGCAATGCATTGAATGGAGCTGAGAAAGAACCAAAGAGAGAATTTTTGCTTTTGCAAGGAGTGCGTTTTGCTTCTCGTGTTCATAAGTTTGCAGGAGGCTTTGATTCCGAAAGCATGGAGGCTTTTGAAGAGCTAAGGAGTCGTGTTCATACAGAAGCAGGACAAAGGAAATGA 2445 41.92 MVNRLGVLVAVSIAAYAIRQLTIRSWRLLILPTNCSENGGATENKGLEEEEQKANSINDATSQVNGRISDLEGGDNSSAELRELPPRESENRLLDDNEKAEGKEPEIQMENSRIELDRLLKLVMELEERKVKLERELLMCNGTKGDKTDVMELRKTLESKNEDISMLNITISSLQAERKKLQEEIVKGALMREELEKARSKIKELQRQIQLDANQTKEHLLSLKQRVSALQAKEEEAVKKEAELYKRLKAAKDFEVELGELKRKNRELLHENQELASKLDVMKARITDLTNMTESETITKEREEAQKLRSENENLIKQLEGLQMNRFSEVEELVYLRWINACLRYELRDNDNETSVGESARYLNKSLSPKSKEKAKQLMLEYAELEFGQAETDHESNFSHPFSSGIEDFDNTSIDSSRSRTNSFSEKPNSNLSLKKLSRNKSGPSAVSSHRWKDPLEAEMALSAAKTVTLSEVRLQVSSRNSVNSVATSFQLMSKSVEESRKLKYSASKQHHKLALGSEKQIKEKAEKETAKDSGVVSSPKLDHDEGTSMRKKPATFPHKLAQMKVKRTSCDPYSQYNESKNIILNPTSSSDPRNRVKADMETQGDLVMPLPMEVREASFSNMEDVLSFILWLDEILSSSVDEKEILEHFDWPEGKTDALREAAFGYQNLMKLGAQVSCFVDSPKLTCEVALNKMHSLQDKVEQEVYAVLRTRDTAISRYEELGIPIDWLLDSGVVGMMKISCVELARKYMKRIVSECNALNGAEKEPKREFLLLQGVRFASRVHKFAGGFDSESMEAFEELRSRVHTEAGQRK 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27062294 27071779 + Maker00020701 Lcy10g0877 644388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0877 814 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 69 387 IPR040265 GO:0009658(PANTHER)|GO:0009707(PANTHER)
Lcy10g0877 814 MobiDBLite consensus disorder prediction 409 451 - -
Lcy10g0877 814 Coils Coil 157 240 - -
Lcy10g0877 814 Coils Coil 251 292 - -
Lcy10g0877 814 MobiDBLite consensus disorder prediction 37 104 - -
Lcy10g0877 814 MobiDBLite consensus disorder prediction 513 553 - -
Lcy10g0877 814 MobiDBLite consensus disorder prediction 56 72 - -
Lcy10g0877 814 Coils Coil 298 325 - -
Lcy10g0877 814 MobiDBLite consensus disorder prediction 81 104 - -
Lcy10g0877 814 MobiDBLite consensus disorder prediction 409 447 - -
Lcy10g0877 814 Coils Coil 109 143 - -
Lcy10g0877 814 MobiDBLite consensus disorder prediction 508 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0877 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0877 Lcy-Chr10:27062294 Lcy1g0088 Lcy-Chr1:797649 6.23E-70 dispersed
Lcy10g0877 Lcy-Chr10:27062294 Lcy7g0410 Lcy-Chr7:3516491 4.22E-212 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g251 . Blo16g01047 . Bda11g00222 Bpe13g01324 . . . Cmo04g01612 Cmo18g01069 . Cma18g01050 Car04g01590 Car18g00975 Sed06g1858 Cpe09g00269 Cpe01g01369 Bhi07g01378 Tan04g0905 Cmetu10g1207 Lac13g0451 Hepe10g1864 . . . . . . . . . Cone13ag0861 Cone19ag0861 . . . Csa05g02076 Chy10g01109 Cme10g00298 . . . Bda11g00222 . . . Bma06g00775 . . . . Cma15g01418 . Car15g01280 Cpe13g00031 . Bhi12g00819 . . . . . Lcy10g0877 Cla01g00560 Cam01g0583 Cec01g0575 Cco01g0599 Clacu01g0578 Cmu01g0549 Cre09g1958 Lsi09g00609 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012142 0 6 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 2 0 1 1 1 3 3 0 30