Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0891 ATGAAGGAGGAAGGAGACTGCTTTCAAGGGTTTCAAGAGCAGCTTCTAATGCAACAATTCCAAACGATGCTGCAAAACGCCGACGTTTTCGGAGTAGGAGGAGGAGGGTTGATTTTTCCTGAAGTTTCTCCGATGATGTTTCCGCCGCCGTGGACGGCGGCGACGACGACGAACCTCCCTCAAGTCCACGGATTCAACCCGACCCGGGACCACCACGACCCGTTTATCCCACCGCCGCCGCCAGCTTCCTACGCCAGCTTTTTCAATCGGAGAAATGCTTCTCTGCAGTTCCCTTACGATATTGCCAACAATAACCTTGGAATTGGGCAGATGGGTCAGCCCGGTTCTGCCCCATTTGGTCTGCAGGCCGAGCTGACCAAGATGACCGCTCAGGAAATAATGGACGCAAAAGCACTTGCAGCCTCGAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAAGCATCTTGCTAAGCTACGAAGCTTGCTCCCAAGCACCACAAAAACGGACAAGGCATCATTGCTGGCAGAAGTAATCCAACATGTGAAAGAGCTTAAACGACAGACTACATTGATAGCCGACGTAAGTCCGGTGCCAACCGAGCTCGATGAGCTATCGGTGGACGTCGACGCCTCGGACGAGGATGGAAAGTTTGTGATAAAAGCCTCCCTTTGTTGCGAGGACAGGTCTGATCTCTTGCCGCAGATCATCAAAACCCTCAAATCCCTCCGCCTGAGAACCCTAAAAGCCGAGATCACAACCCTCGGCGGCCGCGTGAAGAACGTCTTGTTCATCACCGGTGACGACGACTCCTCCGGCGAGCAACAAGAGCCACAACACCACCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGCCGTGATGGAAAAAGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAACAATCACAACAACATCAATATCATCGAACACAGGTCTCTCTAG 1005 51.44 MKEEGDCFQGFQEQLLMQQFQTMLQNADVFGVGGGGLIFPEVSPMMFPPPWTAATTTNLPQVHGFNPTRDHHDPFIPPPPPASYASFFNRRNASLQFPYDIANNNLGIGQMGQPGSAPFGLQAELTKMTAQEIMDAKALAASKSHSEAERRRRERINKHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSGEQQEPQHHHQYSISSIQEALKAVMEKVCSEDQSSSGSIKRQRTNNHNNINIIEHRSL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27941587 27944639 + Maker00020834 Lcy10g0891 644402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0891 334 Gene3D - 134 197 IPR036638 GO:0046983(InterPro)
Lcy10g0891 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983(InterPro)
Lcy10g0891 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 194 IPR036638 GO:0046983(InterPro)
Lcy10g0891 334 FunFam transcription factor bHLH30 135 198 - -
Lcy10g0891 334 CDD bHLH_AtAIG1_like 135 214 - -
Lcy10g0891 334 MobiDBLite consensus disorder prediction 308 334 - -
Lcy10g0891 334 PANTHER TRANSCRIPTION FACTOR BHLH30 109 322 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0891 334 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983(InterPro)
Lcy10g0891 334 SMART finulus 146 195 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0891 Lcy-Chr10:27941587 Lcy7g0414 Lcy-Chr7:3558474 1.64E-90 dispersed
Lcy13g1474 Lcy-Chr13:33326218 Lcy10g0891 Lcy-Chr10:27941587 1.40E-32 transposed
Lcy10g0891 Lcy-Chr10:27941587 Lcy11g0678 Lcy-Chr11:18668235 1.23E-47 wgd
Lcy10g0891 Lcy-Chr10:27941587 Lcy13g0509 Lcy-Chr13:6281553 5.68E-06 wgd
Lcy10g0891 Lcy-Chr10:27941587 Lcy4g1409 Lcy-Chr4:34851813 1.75E-07 wgd
Lcy10g0891 Lcy-Chr10:27941587 Lcy7g0420 Lcy-Chr7:3631794 1.64E-90 wgd
Lcy10g0891 Lcy-Chr10:27941587 Lcy7g1401 Lcy-Chr7:22044513 8.57E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18948 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0891 - - - 0.0