Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0904 ATGGACGCAAGCTCTGTAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACCCCATTCCTCTTCAAGTCATCGCCGTCGCCGGCCGCCGTCGGGATTCTGCACGAGGCCGAATCCCGCAAGCTTCCATCTTCCCGATTCAAAGGAGTGGTCCCTCAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCACCAACGCGTCTGGCTCGGCACATTCAACGAGGAGCACGACGCCGCCAAAGCCTACGACATCGCCGCCCTCCGCTTCCGCGGCCGCGACGCTGTCACCAACTTCAAGCCCGACGCCTCCGCCACCGCCACCGCCGACGCCGCCGTCGAGGCCGACTTCCTCAAATCCCACTCCAAGCTGGAGATCGTCGACATGCTCCGCAAGCACACCTACAATGACGAGCTCCAGCAGAGCAAGCGCCACCGCGGGGCCGCTCCGGCTCCGACGTCTCTCGAGCAGGACGGCTCCGATCGTGGGTCGGATTGTTCGCGGGAGGTGCTGTTCGAGAAAAGCGTGACGCCGAGCGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAGCACGCGGAGAAGAACTTCCCGTTGGGGGACGGCGTGGTTTCTTCGGCGAAAGGAATGCTTTTGAATTTCGAGGATATGGGAGGGAAGGTGTGGCGGTTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTCCGGTTCCTCCGGTCGACCGGACCGGATAAGCAGCTTTATATTGATGGGAGACCGGGAGGGGTGAGGGCGGTCCAAGTGGTGAAGCTTTTTGGAGTGAATATTTTGGAAGTGCCGGTGGGTTGTTGTGGAAAGAGAGAGACAGAAGGGTTGTTGGATTTACAAGGAAGTAAGAAGCAAAGAATAATCAAAGCTTTGTAA 981 59.12 MDASSVDESTASDSTSISPVTPFLFKSSPSPAAVGILHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPDASATATADAAVEADFLKSHSKLEIVDMLRKHTYNDELQQSKRHRGAAPAPTSLEQDGSDRGSDCSREVLFEKSVTPSDVGKLNRLVIPKQHAEKNFPLGDGVVSSAKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGPDKQLYIDGRPGGVRAVQVVKLFGVNILEVPVGCCGKRETEGLLDLQGSKKQRIIKAL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28501189 28502169 + Maker00020685 Lcy10g0904 644415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0904 326 ProSiteProfiles AP2/ERF domain profile. 49 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0904 326 CDD B3_DNA 175 263 IPR003340 GO:0003677(InterPro)
Lcy10g0904 326 Gene3D AP2/ERF domain 48 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0904 326 SMART B3_2 176 281 IPR003340 GO:0003677(InterPro)
Lcy10g0904 326 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677(InterPro)
Lcy10g0904 326 SUPERFAMILY DNA-binding pseudobarrel domain 174 268 IPR015300 -
Lcy10g0904 326 Gene3D - 165 282 IPR015300 -
Lcy10g0904 326 SMART rav1_2 49 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0904 326 ProSiteProfiles B3 DNA-binding domain profile. 176 279 IPR003340 GO:0003677(InterPro)
Lcy10g0904 326 MobiDBLite consensus disorder prediction 141 169 - -
Lcy10g0904 326 FunFam AP2 domain-containing protein RAP2.8 48 105 - -
Lcy10g0904 326 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677(InterPro)
Lcy10g0904 326 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 294 IPR044800 GO:0003700(InterPro)
Lcy10g0904 326 CDD AP2 48 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0904 Lcy-Chr10:28501189 Lcy12g1482 Lcy-Chr12:33788159 5.10E-43 dispersed
Lcy2g0169 Lcy-Chr2:1337994 Lcy10g0904 Lcy-Chr10:28501189 7.41E-52 transposed
Lcy2g1157 Lcy-Chr2:11588115 Lcy10g0904 Lcy-Chr10:28501189 6.10E-56 transposed
Lcy10g0392 Lcy-Chr10:8243982 Lcy10g0904 Lcy-Chr10:28501189 1.33E-06 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy13g1039 Lcy-Chr13:22711472 1.87E-66 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy4g1350 Lcy-Chr4:32415061 3.59E-08 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy4g1005 Lcy-Chr4:17636659 5.64E-43 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy4g1005 Lcy-Chr4:17636659 5.64E-43 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy5g0851 Lcy-Chr5:13779527 3.31E-10 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy7g0437 Lcy-Chr7:3855395 1.13E-134 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy9g0587 Lcy-Chr9:19221192 1.31E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18949 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0904 K09287 - csv:101206328 467.618