Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0910 ATGCAGAGTTGTAACTTCACTTGCATATCATCAAGCGAGAGCGCGTGTTTGGAGGCTGATGAAGAAGGAGAAGACTCCATTTTCCTTTCCCTTTGCCCTCCAGGACAACGCCACACAGTTTCTTCCAAACAAAACCAACAGCGTCATCCCATTTACCCTAATTCTTCTCTTCAAAACCCTAATGTCTTTCATCGTCAAGATGCTGCCGTCACCGTCGCAATGCATATCGGCCCCCCTGCCGTCTCCTCCTCCGCCGCCGAATCCAACGACGTCGCCGCCGCCCGCCCGCTCGACGGCCAGTTCTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAGTCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAGGCTTCCATGCTATTGCTGTGCAGAGGGCTGCAAAAACAACATAGAACATCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTGCAGACCCATTACAAGAGAAAGCATGGGGCAAAGCCCTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTGAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGGTCCCTTAAGGACCATGTTCGAGCCTTTGGGGATGGCCATGCACCTCACACTGTCCAACTTTGTGAGGTTGAAGATGACGATTGGGACGACAACGATGATCATCACGAACATGTAAATGGAGCTCAAGGATGGTCTATTTTTCATTGA 864 49.54 MQSCNFTCISSSESACLEADEEGEDSIFLSLCPPGQRHTVSSKQNQQRHPIYPNSSLQNPNVFHRQDAAVTVAMHIGPPAVSSSAAESNDVAAARPLDGQFWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHHEHVNGAQGWSIFH 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28817782 28819232 + Maker00020700 Lcy10g0910 644421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0910 287 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Lcy10g0910 287 FunFam zinc finger protein WIP2-like 115 138 - -
Lcy10g0910 287 PANTHER ZINC FINGER PROTEIN WIP2 16 275 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Lcy10g0910 287 SMART c2h2final6 164 196 IPR013087 -
Lcy10g0910 287 SMART c2h2final6 116 138 IPR013087 -
Lcy10g0910 287 SMART c2h2final6 201 221 IPR013087 -
Lcy10g0910 287 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 200 224 - -
Lcy10g0910 287 FunFam Zinc finger protein WIP2 170 252 - -
Lcy10g0910 287 Gene3D Classic Zinc Finger 158 248 - -
Lcy10g0910 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Lcy10g0910 287 MobiDBLite consensus disorder prediction 38 59 - -
Lcy10g0910 287 SUPERFAMILY beta-beta-alpha zinc fingers 109 138 IPR036236 -
Lcy10g0910 287 SUPERFAMILY beta-beta-alpha zinc fingers 184 221 IPR036236 -
Lcy10g0910 287 Gene3D Classic Zinc Finger 115 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0910 Lcy-Chr10:28817782 Lcy1g2103 Lcy-Chr1:28576337 6.78E-107 dispersed
Lcy10g0910 Lcy-Chr10:28817782 Lcy5g1135 Lcy-Chr5:24245473 6.39E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18950 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0910 - - - 0.0