Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0912 ATGCCAACCTTGATCGGCTCGTTTTGTTGCATCCTTTGTTGGATGACGGAGGAAGACCTTGATCACTTGTTATGGAGATGTGATTTTGCTAGTTTGGTCTGGGACACGTTCTTTGAGATGTTTGGCTGGCAGTTTACTAGATACAGGAGCATTAGGGAGATGATCAAGGAGTTCATTCCCCATCCACCTTTCCTTGAGAGGGGGAATTTCTTGTGGCAGGCGGGCATTTGTGCTATTGTTTGGTGTCTTTGGGAGGACATCGACAAGGCAGTCCATCAGATGATAATTAGTGCTGGTGCTTATCCTTCATCTCTTGGCTACGGTGGATTTCCAAAGAGTGTCTGCACATCAGTTAACGAATGCATGTTTCATGGAATACCAGACTCCCGTCATTTGCAGGGATATCATGGAGACACATCGAAGACATTTCTATGTGGGGATGTTAGTGATGAAATGAAATGTCTAGTGAAGGTTACAGAAGAATGCTTGGAGAGAGGAATCTCTGTTTGCAAAGATGGAGCCCCTTTTAGGCAAATAGGAGAGACAATCAGGGAGCATGCTGAAAAATATAGTTTTGAAGTTGAACGTTTTATTGGGCATGGTGTGGGAACTGTATTACATTCTCAGCCCCTTATATTTTATCCCTCCAAGGAGGATCCTCCTGGGTGCATGATTGAAGGCCAAACCTTTACAATCGGTGCTCGATTTTGGCAAGAGGTGCTCGGTCTCGGCCTCCGCCAGGTGAGCTTGACTTACATGAAGTGCTTGAGCAAGTGTTTGAGCTCTGAAGTGAGGCTCGCATGGTGTCGATCTTCGCTTGAATCAATAGGGTTGGCCTTGGTCACAACCATGGCTATGGTCGGCCTCGGCCTCAGGCATGGCTCGGGTAGGCCTCGGCCTCGGCCTCAATCATATCTGAGGTCGGCCTCGGCCTCGGCCATACCTGTGGTTGGCTTCAGCCCTGGCTTTGAACAGTCTGTCGTTCTTTGTGTCTGGCTCCTTCGCTTCAATCCGGATCTTGCCTTATGGGATGACTTCCAACTCCTTGACGACCTTCTTTTCTTGGTGTCTTCAATCTTGTCAAAGCTTGTGCTTGTTGTTGATTTGTCCTCCAAGGATGGCTCTGATCTCCTGTTGGGTTTCCCCCTAATCAGTCTGGATGAACATCTCTGGTCGGCCTCGGCCTGGTCAGCCTCGGCCTGGTCGACCTCTGCTTGGTCGACCTCGGCCTCAGCCTTCGCACTGTTCGTCTGGTAG 1257 49.24 MPTLIGSFCCILCWMTEEDLDHLLWRCDFASLVWDTFFEMFGWQFTRYRSIREMIKEFIPHPPFLERGNFLWQAGICAIVWCLWEDIDKAVHQMIISAGAYPSSLGYGGFPKSVCTSVNECMFHGIPDSRHLQGYHGDTSKTFLCGDVSDEMKCLVKVTEECLERGISVCKDGAPFRQIGETIREHAEKYSFEVERFIGHGVGTVLHSQPLIFYPSKEDPPGCMIEGQTFTIGARFWQEVLGLGLRQVSLTYMKCLSKCLSSEVRLAWCRSSLESIGLALVTTMAMVGLGLRHGSGRPRPRPQSYLRSASASAIPVVGFSPGFEQSVVLCVWLLRFNPDLALWDDFQLLDDLLFLVSSILSKLVLVVDLSSKDGSDLLLGFPLISLDEHLWSASAWSASAWSTSAWSTSASAFALFVW 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28915008 28926284 + Maker00020862 Lcy10g0912 644423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0912 418 Gene3D Creatinase/methionine aminopeptidase superfamily 83 240 IPR036005 -
Lcy10g0912 418 SUPERFAMILY Creatinase/aminopeptidase 85 238 IPR036005 -
Lcy10g0912 418 Pfam Metallopeptidase family M24 86 237 IPR000994 -
Lcy10g0912 418 PANTHER METHIONINE AMINOPEPTIDASE 85 232 - GO:0009507(PANTHER)|GO:0070006(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0912 K01265 - - cit:102623462 231.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0912 Lcy-Chr10:28915008 Lcy13g1435 Lcy-Chr13:32842324 1.07E-41 dispersed
Lcy10g0906 Lcy-Chr10:28639674 Lcy10g0912 Lcy-Chr10:28915008 2.58E-71 proximal
Lcy1g2455 Lcy-Chr1:42562672 Lcy10g0912 Lcy-Chr10:28915008 3.35E-13 wgd
Lcy1g2475 Lcy-Chr1:43296153 Lcy10g0912 Lcy-Chr10:28915008 5.02E-30 wgd
Lcy1g1851 Lcy-Chr1:20673332 Lcy10g0912 Lcy-Chr10:28915008 7.63E-35 wgd
Lcy1g2475 Lcy-Chr1:43296153 Lcy10g0912 Lcy-Chr10:28915008 5.02E-30 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy12g1231 Lcy-Chr12:25423183 8.70E-20 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy2g2080 Lcy-Chr2:40963881 3.39E-23 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy4g1449 Lcy-Chr4:36069178 1.27E-11 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy5g0894 Lcy-Chr5:15030738 3.44E-34 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy5g1281 Lcy-Chr5:30241063 4.00E-11 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy5g1097 Lcy-Chr5:22536248 3.95E-35 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy7g1386 Lcy-Chr7:21288070 3.71E-06 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy8g0624 Lcy-Chr8:22020219 8.91E-35 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy8g0478 Lcy-Chr8:15576720 4.09E-23 wgd
Lcy10g0912 Lcy-Chr10:28915008 Lcy9g0591 Lcy-Chr9:19390145 1.08E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g267 . . . . . . Bma14g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0467 Cone9ag0479 . . . . . Blo11g00831 . . Bpe11g01691 . . . . . . . . . . . . Bhi12g01373 . . . . . Lcy10g0912 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002340 1 1 2 1 1 2 0 2 2 2 2 2 2 2 2 2 2 3 2 2 2 3 3 2 3 2 1 5 1 2 59