Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0967 ATGCAGAGCTTTGAAAACCCAGAACAGCTCTATGCCCACTCTTCTTCTTCTTCCATCTTTCTCCGGGGAGACGACAGTGGGCGAATCCATACGCGGTTTCTTCCGGATATTGAGGAGCTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCACGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCGGTTTAAAATCGACCCACAACGCAGCTTTTCCAATCCACCTACCGTACGCGAGCGCGGATGTGGGTTCAATAGGAGCAGGGTATTTAGACACGGGACAGCAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGACGGCGGCGGTGACGGTGGCGGCTGCCGCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGTGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAGGGAGCTGCTCATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCCAAAGCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTACAGCAGCTGGAAAATAGTCGACAGAGGCTTACGCAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCTGGGGCAGGAGACCATTGTTTATCAATGGCAGGAAATGGTGCTTTGGCATTTGATCTCGACTATTCGCGGTGGCTCGACGAGCATCAACGGCTGATCAACGATTTGAGAGCATCTGCTAATTCTCAGATGGGCGACGACGAATTGCGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAGGCTGAAGAGCGTAGGCGCCAAGGCCGACGTATTCCACATCCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTAGGAGGATTCCGATCGTCCGAACTTCTAAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAACCTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTCTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAATTCGGGAAATGTTGCCGATTACATGGGCCAAATGGCGATTGCGATGAGCAAGCTAACGACGCTCGAGAACTTTCTCCACCAGGCCGATCTTCTGAGGCAGCAAACGCTCCAACAGTTGCATCGAATATTAACTACTCGACAAGCTGCACGAGCGCTTCTTGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGGCCAAGAGATTGA 1398 50.29 MQSFENPEQLYAHSSSSSIFLRGDDSGRIHTRFLPDIEELQQSAAAIAAFHHDDAVDLSPSSVFGLKSTHNAAFPIHLPYASADVGSIGAGYLDTGQQLMRLKRLAPPQTAAVTVAAAASLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKAKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLTQLEQELHRARQQGIFVASGAGDHCLSMAGNGALAFDLDYSRWLDEHQRLINDLRASANSQMGDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPANSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQLHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31075962 31079514 - Maker00008775 Lcy10g0967 644478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0967 465 Pfam Seed dormancy control 264 337 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy10g0967 465 Pfam bZIP transcription factor 179 220 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0967 465 CDD bZIP_HBP1b-like 180 232 - -
Lcy10g0967 465 SMART brlzneu 176 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0967 465 Coils Coil 199 226 - -
Lcy10g0967 465 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 222 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0967 465 SUPERFAMILY Leucine zipper domain 180 223 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0967 465 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0967 465 Gene3D - 179 228 - -
Lcy10g0967 465 FunFam BZIP family transcription factor 179 228 - -
Lcy10g0967 465 ProSiteProfiles DOG1 domain profile. 246 462 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy10g0967 465 PANTHER TRANSCRIPTION FACTOR TGA9 136 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0967 Lcy-Chr10:31075962 Lcy5g0911 Lcy-Chr5:15586818 3.34E-137 dispersed
Lcy10g2336 Lcy-Chr10:46956212 Lcy10g0967 Lcy-Chr10:31075962 1.88E-80 transposed
Lcy6g0977 Lcy-Chr6:10271897 Lcy10g0967 Lcy-Chr10:31075962 5.34E-90 transposed
Lcy10g0967 Lcy-Chr10:31075962 Lcy5g1196 Lcy-Chr5:27254294 8.11E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18952 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0967 K14431 - csv:101210308 802.357