Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0975 ATGATTTTCTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGCTTCACTCTCTCCGATTTCGCCGACTCTCTCGAGCAAGAACGCCGCAAAGTACTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTAACTCATGCCATTGATTGTTGCAGGCATCAGCCGTCGGAGACGACGACGGAGAATCGTCAGTCGGAGTGTTCGGAGCAAACTTCCAGCGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTCTCTGATTTCGAACGCCAACAGTCTCGTCAGACTCAAGAGGAGGAGAAGAATAGCGACTCTGATCCGAACAATTTGAATTTGGGTCCGTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTCCCTCCCTGAATCAGGACCCGCCGATGAAGTCGGCCGTTGTTGAAGTCAAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGAGGTGGAGGGACGTCGTCGTCTTCGGCTCCGGCTCCGGCGACGGCCACGAGCTCGACGGCGGAGACGGGGTCCGGCGGAAACGGCCGACGGGAAGAGAAGGACGCGCAAAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGCGGTTCCCATGTGGCGACGCCGAAGCAAATTAGAGAATTAATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAGTATCGTCTGCACACGAGACGCCCAAGTCCCACGATCCACAACAACGACAGCGCCCAGCCGCCGCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCGTGGCCGCCACCACTTCCTCAGGAGAAGCAGTCAGCGCCGCCACCACTAACGGAATCTATGCACCGGTGGTTACAGCAGCGCCGCCGCAGCCATTACCCAGTACAGTCCAAAAGCCCAAACCGAGGCCTAAGGTTTCTTCCGCCGCCGCCGCGGTCGCCGCCGAATGTAATTCTCCGACTACATCTTCGTCCACTCATACGTCTTCAGTTTCACCTGCTTTTTGA 1125 56.44 MIFSDKMQEIASKMGFTLSDFADSLEQERRKVLMFQRELPLCLELVTHAIDCCRHQPSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFERQQSRQTQEEEKNSDSDPNNLNLGPSDWLRSAQLWNQTSDPPSLNQDPPMKSAVVEVKRNGGAFRPFQKEKTGGGGGGTSSSSAPAPATATSSTAETGSGGNGRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNDSAQPPQFLVVGGIWVPAAEYAAVAATTSSGEAVSAATTNGIYAPVVTAAPPQPLPSTVQKPKPRPKVSSAAAAVAAECNSPTTSSSTHTSSVSPAF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31313088 31316328 - Maker00008690 Lcy10g0975 644486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0975 374 MobiDBLite consensus disorder prediction 158 215 - -
Lcy10g0975 374 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 353 374 - -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 58 123 - -
Lcy10g0975 374 FunFam Myb family transcription factor 210 268 - -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 328 374 - -
Lcy10g0975 374 Gene3D - 210 268 - -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 58 77 - -
Lcy10g0975 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 335 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0975 374 MobiDBLite consensus disorder prediction 197 215 - -
Lcy10g0975 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 170 196 - -
Lcy10g0975 374 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Lcy10g0975 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0975 Lcy-Chr10:31313088 Lcy2g0781 Lcy-Chr2:6945216 4.16E-48 dispersed
Lcy7g0438 Lcy-Chr7:3862688 Lcy10g0975 Lcy-Chr10:31313088 4.87E-75 transposed
Lcy1g1774 Lcy-Chr1:18927251 Lcy10g0975 Lcy-Chr10:31313088 2.99E-13 wgd
Lcy10g0975 Lcy-Chr10:31313088 Lcy5g0800 Lcy-Chr5:12320914 5.02E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18954 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0975 - - - 0.0