Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0975 | ATGATTTTCTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGCTTCACTCTCTCCGATTTCGCCGACTCTCTCGAGCAAGAACGCCGCAAAGTACTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTAACTCATGCCATTGATTGTTGCAGGCATCAGCCGTCGGAGACGACGACGGAGAATCGTCAGTCGGAGTGTTCGGAGCAAACTTCCAGCGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTCTCTGATTTCGAACGCCAACAGTCTCGTCAGACTCAAGAGGAGGAGAAGAATAGCGACTCTGATCCGAACAATTTGAATTTGGGTCCGTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTCCCTCCCTGAATCAGGACCCGCCGATGAAGTCGGCCGTTGTTGAAGTCAAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGAGGTGGAGGGACGTCGTCGTCTTCGGCTCCGGCTCCGGCGACGGCCACGAGCTCGACGGCGGAGACGGGGTCCGGCGGAAACGGCCGACGGGAAGAGAAGGACGCGCAAAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGCGGTTCCCATGTGGCGACGCCGAAGCAAATTAGAGAATTAATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAGTATCGTCTGCACACGAGACGCCCAAGTCCCACGATCCACAACAACGACAGCGCCCAGCCGCCGCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCGTGGCCGCCACCACTTCCTCAGGAGAAGCAGTCAGCGCCGCCACCACTAACGGAATCTATGCACCGGTGGTTACAGCAGCGCCGCCGCAGCCATTACCCAGTACAGTCCAAAAGCCCAAACCGAGGCCTAAGGTTTCTTCCGCCGCCGCCGCGGTCGCCGCCGAATGTAATTCTCCGACTACATCTTCGTCCACTCATACGTCTTCAGTTTCACCTGCTTTTTGA | 1125 | 56.44 | MIFSDKMQEIASKMGFTLSDFADSLEQERRKVLMFQRELPLCLELVTHAIDCCRHQPSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFERQQSRQTQEEEKNSDSDPNNLNLGPSDWLRSAQLWNQTSDPPSLNQDPPMKSAVVEVKRNGGAFRPFQKEKTGGGGGGTSSSSAPAPATATSSTAETGSGGNGRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNDSAQPPQFLVVGGIWVPAAEYAAVAATTSSGEAVSAATTNGIYAPVVTAAPPQPLPSTVQKPKPRPKVSSAAAAVAAECNSPTTSSSTHTSSVSPAF | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 31313088 | 31316328 | - | Maker00008690 | Lcy10g0975 | 644486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0975 | 374 | MobiDBLite | consensus disorder prediction | 158 | 215 | - | - | |
Lcy10g0975 | 374 | SUPERFAMILY | Homeodomain-like | 209 | 269 | IPR009057 | - | |
Lcy10g0975 | 374 | MobiDBLite | consensus disorder prediction | 353 | 374 | - | - | |
Lcy10g0975 | 374 | MobiDBLite | consensus disorder prediction | 58 | 123 | - | - | |
Lcy10g0975 | 374 | FunFam | Myb family transcription factor | 210 | 268 | - | - | |
Lcy10g0975 | 374 | MobiDBLite | consensus disorder prediction | 328 | 374 | - | - | |
Lcy10g0975 | 374 | Gene3D | - | 210 | 268 | - | - | |
Lcy10g0975 | 374 | MobiDBLite | consensus disorder prediction | 58 | 77 | - | - | |
Lcy10g0975 | 374 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 12 | 335 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g0975 | 374 | MobiDBLite | consensus disorder prediction | 197 | 215 | - | - | |
Lcy10g0975 | 374 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 208 | 268 | IPR017930 | - | |
Lcy10g0975 | 374 | MobiDBLite | consensus disorder prediction | 170 | 196 | - | - | |
Lcy10g0975 | 374 | Pfam | Myb-like DNA-binding domain | 213 | 264 | IPR001005 | - | |
Lcy10g0975 | 374 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 211 | 266 | IPR006447 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0975 | Lcy-Chr10:31313088 | Lcy2g0781 | Lcy-Chr2:6945216 | 4.16E-48 | dispersed | |
Lcy7g0438 | Lcy-Chr7:3862688 | Lcy10g0975 | Lcy-Chr10:31313088 | 4.87E-75 | transposed | |
Lcy1g1774 | Lcy-Chr1:18927251 | Lcy10g0975 | Lcy-Chr10:31313088 | 2.99E-13 | wgd | |
Lcy10g0975 | Lcy-Chr10:31313088 | Lcy5g0800 | Lcy-Chr5:12320914 | 5.02E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18954 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0975 | - | - | - | 0.0 |