Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0975 ATGATTTTCTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGCTTCACTCTCTCCGATTTCGCCGACTCTCTCGAGCAAGAACGCCGCAAAGTACTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTAACTCATGCCATTGATTGTTGCAGGCATCAGCCGTCGGAGACGACGACGGAGAATCGTCAGTCGGAGTGTTCGGAGCAAACTTCCAGCGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTCTCTGATTTCGAACGCCAACAGTCTCGTCAGACTCAAGAGGAGGAGAAGAATAGCGACTCTGATCCGAACAATTTGAATTTGGGTCCGTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTCCCTCCCTGAATCAGGACCCGCCGATGAAGTCGGCCGTTGTTGAAGTCAAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGAGGTGGAGGGACGTCGTCGTCTTCGGCTCCGGCTCCGGCGACGGCCACGAGCTCGACGGCGGAGACGGGGTCCGGCGGAAACGGCCGACGGGAAGAGAAGGACGCGCAAAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGCGGTTCCCATGTGGCGACGCCGAAGCAAATTAGAGAATTAATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAGTATCGTCTGCACACGAGACGCCCAAGTCCCACGATCCACAACAACGACAGCGCCCAGCCGCCGCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCGTGGCCGCCACCACTTCCTCAGGAGAAGCAGTCAGCGCCGCCACCACTAACGGAATCTATGCACCGGTGGTTACAGCAGCGCCGCCGCAGCCATTACCCAGTACAGTCCAAAAGCCCAAACCGAGGCCTAAGGTTTCTTCCGCCGCCGCCGCGGTCGCCGCCGAATGTAATTCTCCGACTACATCTTCGTCCACTCATACGTCTTCAGTTTCACCTGCTTTTTGA 1125 56.44 MIFSDKMQEIASKMGFTLSDFADSLEQERRKVLMFQRELPLCLELVTHAIDCCRHQPSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFERQQSRQTQEEEKNSDSDPNNLNLGPSDWLRSAQLWNQTSDPPSLNQDPPMKSAVVEVKRNGGAFRPFQKEKTGGGGGGTSSSSAPAPATATSSTAETGSGGNGRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNDSAQPPQFLVVGGIWVPAAEYAAVAATTSSGEAVSAATTNGIYAPVVTAAPPQPLPSTVQKPKPRPKVSSAAAAVAAECNSPTTSSSTHTSSVSPAF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31313088 31316328 - Maker00008690 Lcy10g0975 644486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0975 374 MobiDBLite consensus disorder prediction 158 215 - -
Lcy10g0975 374 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 353 374 - -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 58 123 - -
Lcy10g0975 374 FunFam Myb family transcription factor 210 268 - -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 328 374 - -
Lcy10g0975 374 Gene3D - 210 268 - -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 58 77 - -
Lcy10g0975 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 335 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g0975 374 MobiDBLite consensus disorder prediction 197 215 - -
Lcy10g0975 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Lcy10g0975 374 MobiDBLite consensus disorder prediction 170 196 - -
Lcy10g0975 374 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Lcy10g0975 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0975 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0975 Lcy-Chr10:31313088 Lcy2g0781 Lcy-Chr2:6945216 4.16E-48 dispersed
Lcy7g0438 Lcy-Chr7:3862688 Lcy10g0975 Lcy-Chr10:31313088 4.87E-75 transposed
Lcy1g1774 Lcy-Chr1:18927251 Lcy10g0975 Lcy-Chr10:31313088 2.99E-13 wgd
Lcy10g0975 Lcy-Chr10:31313088 Lcy5g0800 Lcy-Chr5:12320914 5.02E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18954 None None None None Lcy TF